PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Prupe.1G195900.6.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
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Family | FAR1 | ||||||||
Protein Properties | Length: 149aa MW: 16775 Da PI: 6.521 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 56.6 | 8.6e-18 | 46 | 127 | 2 | 90 |
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 fY++YA++vGF +r+ +s+ks+r+g+i++r + C + ++ ++ +r C+a++ +++ek g w+v+k+ ++HnH+l+ Prupe.1G195900.6.p 46 FYDDYASRVGFLTRVLSSRKSERDGSIISRGLGCRGVSDNGRKV-------MQECAQREFCTAMVLLRQEKPGSWVVKKFLKDHNHPLV 127 9*********************************8666655544.......4588999*****************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 6.5E-15 | 46 | 127 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 149 aa Download sequence Send to blast |
MEVQMDDQNG TMYTSEGGET TIVEVSTNQE PYEGMLFESE DAARVFYDDY ASRVGFLTRV 60 LSSRKSERDG SIISRGLGCR GVSDNGRKVM QECAQREFCT AMVLLRQEKP GSWVVKKFLK 120 DHNHPLVVQS QKSRRTLVSL SYVAYVLM* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Prupe.1G195900.6.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007227200.2 | 1e-100 | protein FAR1-RELATED SEQUENCE 5 isoform X1 | ||||
TrEMBL | A0A251R127 | 1e-106 | A0A251R127_PRUPE; Uncharacterized protein | ||||
STRING | EMJ28399 | 1e-98 | (Prunus persica) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G43280.1 | 3e-35 | FAR1 family protein |
Link Out ? help Back to Top | |
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Phytozome | Prupe.1G195900.6.p |