PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Prupe.1G195800.2.p | ||||||||
Common Name | PRUPE_ppa010562mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
|
||||||||
Family | FAR1 | ||||||||
Protein Properties | Length: 246aa MW: 28477.8 Da PI: 6.1838 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 86.2 | 4.9e-27 | 72 | 163 | 1 | 91 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerr..traetrtgCkaklkvkkekdgkwevtkleleHnHel 89 +fY+ Y++++GF++r++++++s +++ i+ r+fvCskeg+r+e+ + +++r +r+ tr gC+a+l+++ ++ gkw+++ +++eHnHel Prupe.1G195800.2.p 72 DFYEMYGRHMGFTIRNNRTRRSLKDNAIIGREFVCSKEGFRAEKYAT-SQNRVlpSRPATRKGCNAMLRITAKDGGKWVIYGFVKEHNHEL 161 6*********************9********************9988.33333459**********************************9 PP FAR1 90 ap 91 +p Prupe.1G195800.2.p 162 NP 163 75 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 6.4E-24 | 72 | 163 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 246 aa Download sequence Send to blast |
MMASTSGQGF SPERNYRCWL DETFSSHETA DDELSYTPDV DNNLIETSSQ DFSLTLEPVI 60 GMEFESAEDA RDFYEMYGRH MGFTIRNNRT RRSLKDNAII GREFVCSKEG FRAEKYATSQ 120 NRVLPSRPAT RKGCNAMLRI TAKDGGKWVI YGFVKEHNHE LNPNKIPPRR SHRIAFCEDE 180 KDLKIRELST ELHREKKKSA AYQEKLQIVL KYIEEHTQRL SLKVELATNN MRELESEEQD 240 SSYSD* |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Prupe.1G195800.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_007226039.1 | 0.0 | protein FAR1-RELATED SEQUENCE 5 | ||||
TrEMBL | M5XZA2 | 0.0 | M5XZA2_PRUPE; Uncharacterized protein | ||||
STRING | EMJ27238 | 0.0 | (Prunus persica) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G07500.1 | 2e-47 | FAR1 family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Prupe.1G195800.2.p |
Entrez Gene | 18792756 |