PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Prupe.1G195700.2.p | ||||||||
Common Name | PRUPE_ppa010254mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
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Family | FAR1 | ||||||||
Protein Properties | Length: 258aa MW: 29853.5 Da PI: 5.8013 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 84.5 | 1.6e-26 | 77 | 167 | 1 | 90 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerr..traetrtgCkaklkvkkekdgkwevtkleleHnHel 89 +fY +Y+++ GF+vr++++++s+ n++++ ++fvCskeg+r+++ +++++ + ++tr gC+a++++ +++ kw+vtk+++eHnH+l Prupe.1G195700.2.p 77 EFYVAYGRRSGFTVRIHHNRRSRVNNQVIGQDFVCSKEGFRAKKYVHRKDR-VlpPPPVTREGCQAMIRLALRDGLKWVVTKFVKEHNHKL 166 6******************************************99883332.245899********************************9 PP FAR1 90 a 90 + Prupe.1G195700.2.p 167 M 167 7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 1.4E-23 | 77 | 167 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 258 aa Download sequence Send to blast |
MDHQSVHGFD SDESDLDMHA ETYENNEGME DVLSENLDLC LDEKEGIAEP SADLPMNIEA 60 LEPNIGMEFN SRDEAREFYV AYGRRSGFTV RIHHNRRSRV NNQVIGQDFV CSKEGFRAKK 120 YVHRKDRVLP PPPVTREGCQ AMIRLALRDG LKWVVTKFVK EHNHKLMSPS KVPWRGSGKH 180 LASEDEKDKR IRELSLELYN ERQKCKRRCA AYEEQLNLIL KDLEKHTEHM SKKVADIVQS 240 IREIEEEQSE DSDSGWT* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Prupe.1G195700.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007223683.1 | 0.0 | protein FAR-RED ELONGATED HYPOCOTYL 3 | ||||
Refseq | XP_021833149.1 | 0.0 | protein FAR-RED ELONGATED HYPOCOTYL 3-like | ||||
TrEMBL | M5XFI8 | 0.0 | M5XFI8_PRUPE; Uncharacterized protein | ||||
STRING | EMJ24882 | 0.0 | (Prunus persica) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G43280.1 | 9e-40 | FAR1 family protein |
Link Out ? help Back to Top | |
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Phytozome | Prupe.1G195700.2.p |
Entrez Gene | 18790926 |