PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.1G194600.1.p
Common NamePRUPE_ppa020137mg
Organism
Prunus persica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family FAR1
Protein Properties Length: 698aa    MW: 80544.5 Da    PI: 8.5473
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.1G194600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR179.27.7e-2535120191
                FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 
                         ++Yn+YA+ vGFsvrk + +k  +ng i kr+f+Cs+eg+ +++++     +++r++ r gCka+l +k+++dgk++v+++  eHnH+l+p
  Prupe.1G194600.1.p  35 QYYNSYARGVGFSVRKLRVNKD-KNGVIHKREFCCSCEGFYRKKTTP----KKKREQRRFGCKAMLGIKLNRDGKYVVKNFIAEHNHDLVP 120
                         69****************9998.8999*************9998777....899999*******************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.3E-2135120IPR004330FAR1 DNA binding domain
PfamPF105515.9E-32241335IPR018289MULE transposase domain
PROSITE profilePS509669.965520558IPR007527Zinc finger, SWIM-type
SMARTSM005751.0E-5533560IPR006564Zinc finger, PMZ-type
PfamPF044349.7E-6533556IPR007527Zinc finger, SWIM-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 698 aa     Download sequence    Send to blast
LDLLDHNEQI EELTRKFGDS PTLGMSFDNE QEAYQYYNSY ARGVGFSVRK LRVNKDKNGV  60
IHKREFCCSC EGFYRKKTTP KKKREQRRFG CKAMLGIKLN RDGKYVVKNF IAEHNHDLVP  120
LSSSHLLRSQ RTIEPSQAGF INQMHHAGLK PSQIFSYMTT EAGGPQHLNF IQADCNNLIM  180
RKRIEFQKRG DSQCLLEYFK QKQAQDKSFF YSVRTNMENE ICGCFFCDGK PRRDYAIFGD  240
VLCFDTTFKT NNYNMVCAPI IGLNNHGQTI LFGCGLLDGE STDACEWLFK VFLQANEGKE  300
PKTIFTDQAQ SIAAAIIEVF PNCHHRLCLW HIYQNAAKNL GHVFSEFQAF AKDFKSCVYD  360
PEIVEEFESS WEALLDDYGL RGNSWLEGIY ALREKWAQVY GRDHFCAGMT TTQRSESINA  420
FLKKFFSRNL LLREFVVQYD KAVADRREKE RQAETSTKQK WRNLSSNWNV EIEATTKYTS  480
KLFYCFQDEC KKLLGLRLKL QSDDGLTRRY MVMNSGMRGM SRSLTYDLSD QTVSCSCKKF  540
EFEGILCAHA LKLYHELEFS TLPSKYYLKR WSKEATCDVD FDSNEEVPLS TLESSSMVQY  600
SELSHIVQRI IAKGARNNQT CTFLKSELLQ LEAKLEKHPY FGDEHDEILD KHVSEDGDNL  660
KLRDPKIQKS KGRGKGRIKS SLESKPSKRK GSSKRKG*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPrupe.1G194600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007224311.20.0protein FAR1-RELATED SEQUENCE 5
TrEMBLM5Y1H30.0M5Y1H3_PRUPE; Uncharacterized protein (Fragment)
STRINGEMJ255100.0(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF4030530
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.11e-134FAR1-related sequence 5