PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Prupe.1G165500.1.p

Organism

Prunus persica

Taxonomic ID

3760

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus

Family

HSF

Protein Properties

Length: 484aa MW: 54129 Da PI: 5.7697

Description

HSF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Prupe.1G165500.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HSF_DNA-bind	111	8.4e-35	16	106	2	101
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkke 92 Fl k+y++++d++++e++sws+n++sfvv+++ efa+ +Lp+yFkh+nf+SF+RQLn+YgF+k++ e+ weF+++ F +++k+ Prupe.1G165500.1.p 16 FLLKTYDMVDDSATDEIVSWSTNKKSFVVWNPPEFARLLLPTYFKHNNFSSFIRQLNTYGFRKIDPER---------WEFANEDFIQDQKH 97 9**************************************************************999.........********** PP XXXXXXXXX CS HSF_DNA-bind 93 llekikrkk 101 ll++i+r+k Prupe.1G165500.1.p 98 LLKNIHRRK 106 *****98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46785	3.9E-35	12	105	IPR011991	Winged helix-turn-helix DNA-binding domain
SMART	SM00415	8.6E-61	12	105	IPR000232	Heat shock factor (HSF)-type, DNA-binding
Gene3D	G3DSA:1.10.10.10	4.1E-37	12	105	IPR011991	Winged helix-turn-helix DNA-binding domain
PRINTS	PR00056	7.7E-19	16	39	IPR000232	Heat shock factor (HSF)-type, DNA-binding
Pfam	PF00447	2.0E-30	16	105	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	7.7E-19	54	66	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PROSITE pattern	PS00434	0	55	79	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	7.7E-19	67	79	IPR000232	Heat shock factor (HSF)-type, DNA-binding

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 484 aa Download sequence Send to blast
MEGASTAGGG GGPAPFLLKT YDMVDDSATD EIVSWSTNKK SFVVWNPPEF ARLLLPTYFK 60 HNNFSSFIRQ LNTYGFRKID PERWEFANED FIQDQKHLLK NIHRRKPIHS HSNPQGSMVD 120 PERAALDDEI EKLSHDKATL EANISRFKQQ RSDAKLQLED LTQRVNSMEQ RQKDLLKFLD 180 KNVQNPTFVE HLTRKIEAMD FSACNKKRRL PDVDHLQPVM ENSFVDNQSS SRSEFGNIFH 240 QDFSSKLRLE LSPADSDINL VSRSTQSSNE DGYSPTRKIS EELKGVQKRT EGLLFAPETL 300 ELSDTGTSFA FKMDSLLSRK ALTVGNPRLH SLQPGLSSNE EGDGHISCQL KLTLASSPLQ 360 VNSSPHSATI PQVGQDISKS LASGLNANGK ESDIRAFTNK NPADEDMHKT CSQEATNNNQ 420 GPPPAPVRVN DVFWEQFLTE RPGCSENEEA SSNYRGNPYD EQDDGRLGHG MSRSAKDAET 480 LTL*

Sequence ? help Back to Top

Protein Sequence Length: 484 aa Download sequence Send to blast

MEGASTAGGG GGPAPFLLKT YDMVDDSATD EIVSWSTNKK SFVVWNPPEF ARLLLPTYFK  60
HNNFSSFIRQ LNTYGFRKID PERWEFANED FIQDQKHLLK NIHRRKPIHS HSNPQGSMVD  120
PERAALDDEI EKLSHDKATL EANISRFKQQ RSDAKLQLED LTQRVNSMEQ RQKDLLKFLD  180
KNVQNPTFVE HLTRKIEAMD FSACNKKRRL PDVDHLQPVM ENSFVDNQSS SRSEFGNIFH  240
QDFSSKLRLE LSPADSDINL VSRSTQSSNE DGYSPTRKIS EELKGVQKRT EGLLFAPETL  300
ELSDTGTSFA FKMDSLLSRK ALTVGNPRLH SLQPGLSSNE EGDGHISCQL KLTLASSPLQ  360
VNSSPHSATI PQVGQDISKS LASGLNANGK ESDIRAFTNK NPADEDMHKT CSQEATNNNQ  420
GPPPAPVRVN DVFWEQFLTE RPGCSENEEA SSNYRGNPYD EQDDGRLGHG MSRSAKDAET  480
LTL*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5d5u_B	1e-20	3	105	17	129	Heat shock factor protein 1
5d5v_B	1e-20	3	105	17	129	Heat shock factor protein 1
5d5v_D	1e-20	3	105	17	129	Heat shock factor protein 1
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Prupe.1G165500.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KR132193	0.0	KR132193.1 Eriobotrya japonica heat shock factor 2 (HSF2) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007223387.2	0.0	heat stress transcription factor A-5
Swissprot	Q94BZ5	1e-169	HSFA5_ARATH; Heat stress transcription factor A-5
TrEMBL	A0A251QYG7	0.0	A0A251QYG7_PRUPE; Uncharacterized protein
STRING	XP_008222805.1	0.0	(Prunus mume)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4961	32	53

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G13980.1	1e-171	HSF family protein

Link Out ? help Back to Top
Phytozome	Prupe.1G165500.1.p

Publications ? help Back to Top
Reňák D,Gibalová A,Solcová K,Honys D A new link between stress response and nucleolar function during pollen development in Arabidopsis mediated by AtREN1 protein. Plant Cell Environ., 2014. 37(3): p. 670-83 [PMID:23961845]