PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Prupe.1G139300.4.p

Common Name

PRUPE_ppa000476mg

Organism

Prunus persica

Taxonomic ID

3760

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus

Family

MYB_related

Protein Properties

Length: 1130aa MW: 126028 Da PI: 8.9953

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Prupe.1G139300.4.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	29.2	2.1e-09	46	81	3	40
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqc 40 WT+eE e +++a +++G++ Wk++a+ + +R+ +++ Prupe.1G139300.4.p 46 QWTKEELENFYEAYRKYGKD-WKKVASVVR-HRSVEMV 81 6***************99.******9.9998766 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51293	10.945	42	93	IPR017884	SANT domain
SMART	SM00717	1.9E-6	43	91	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	6.5E-11	43	91	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	5.8E-5	46	80	IPR009057	Homeodomain-like
Pfam	PF00249	5.2E-8	46	81	IPR001005	SANT/Myb domain
CDD	cd00167	2.04E-7	47	81	No hit	No description
Pfam	PF06584	2.5E-32	591	691	IPR033471	DIRP domain
SMART	SM01135	1.1E-56	591	692	IPR033471	DIRP domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005730	Cellular Component	nucleolus
GO:0016592	Cellular Component	mediator complex
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1130 aa Download sequence Send to blast
MAPSRKSRSV NKRFSYMNEA ASNKYGDNAN KTGQKKRKLS DMLGPQWTKE ELENFYEAYR 60 KYGKDWKKVA SVVRHRSVEM VEALYSMNKA YLSLPEGVAS VVGLIAMMTD HYCVLGGSDS 120 EQENNEDAET SRKPQKHARS KLRSESSKGL EGHIPDFSES HPMASTSDCL SLLKNRRSGI 180 RPHAVKKRTP RVPVAYSNDQ DNSRKYSSPA RQGLKLNADA NNNDVAHEIA LALTEASHRG 240 GSPLVSWTPK RKAKGTTPSP VRNGERMCVE SEVTNARLHG CEMDEGGCEL SLGSTEADND 300 YYDRNEKYAM GREGTGTLEV QQRRKRYFVK KKEVDESKNK HVEDIKEACS GTEEGQKLGA 360 IKGKLDTKVA KSARSFYKDT RKKSKKALIG GDEGSPFDAL QTLADLSLMM PEAADTESSA 420 HVKEDNFNIA NKSKLKGSRP IPGVEHAVFK TSKLGKLGEG VHQSNSGLQK RKQKSLSFKI 480 YNEAQTDCYA SDNEKIEATV EVKKSASKGL STVQVPSANP ANLPTKNKGK WEMDMQKSSI 540 QKDTKSPESI LDDQPDKLGP SFRNRELNIK EKLSNCLSRY QVRRWCAFEW FYSAIDYPWF 600 AKREFVEYLD HVGLGHVPRL TRVEWGVIRS SLGRPRRFSE QFLKEEKEKL NQYRESVRTH 660 YAELNAGTRE GLPTDLARPL SVGQHVIAFH PRAREIHNGI VLTVDHSRCS VQFDQPELGV 720 EYIMDVDCMP LHPAENLPAS FRKHNVTVNR YIENLKELKI NEQLKEGTTK GYMKISSSDK 780 LVSTGVPGYI LPSNHRINKS SKQTGVKSSS FNVQAKVGPG ETASTRVANY QPSIPAQTQA 840 KEADVQAIYE LTRALDKKEA VVSELRRMND EVFENQRDED NSIRDSEPFK KEYAAVLLQL 900 SQVNDQVSSA LLCLRQRNTY RGSSPHTVVK TMDNLSGPGS LSNSYGYSCD VQESASHMRE 960 IVESSRAKAH KMVDAAMQAF SSLRKENNFD KIEEVIDFVS NRLSDDAGML AMGSSTTLAD 1020 PIPFSQDQLT SCTSKPLATG CAHDPPKSNN LSNQSEEKLL SDLIVNCVAA FMMIQTCTAR 1080 QFPPADVAQV LDHAVTSLQP FCPQNLSVYG EIQKCMGIIR NQIMALVPT*

Sequence ? help Back to Top

Protein Sequence Length: 1130 aa Download sequence Send to blast

MAPSRKSRSV NKRFSYMNEA ASNKYGDNAN KTGQKKRKLS DMLGPQWTKE ELENFYEAYR  60
KYGKDWKKVA SVVRHRSVEM VEALYSMNKA YLSLPEGVAS VVGLIAMMTD HYCVLGGSDS  120
EQENNEDAET SRKPQKHARS KLRSESSKGL EGHIPDFSES HPMASTSDCL SLLKNRRSGI  180
RPHAVKKRTP RVPVAYSNDQ DNSRKYSSPA RQGLKLNADA NNNDVAHEIA LALTEASHRG  240
GSPLVSWTPK RKAKGTTPSP VRNGERMCVE SEVTNARLHG CEMDEGGCEL SLGSTEADND  300
YYDRNEKYAM GREGTGTLEV QQRRKRYFVK KKEVDESKNK HVEDIKEACS GTEEGQKLGA  360
IKGKLDTKVA KSARSFYKDT RKKSKKALIG GDEGSPFDAL QTLADLSLMM PEAADTESSA  420
HVKEDNFNIA NKSKLKGSRP IPGVEHAVFK TSKLGKLGEG VHQSNSGLQK RKQKSLSFKI  480
YNEAQTDCYA SDNEKIEATV EVKKSASKGL STVQVPSANP ANLPTKNKGK WEMDMQKSSI  540
QKDTKSPESI LDDQPDKLGP SFRNRELNIK EKLSNCLSRY QVRRWCAFEW FYSAIDYPWF  600
AKREFVEYLD HVGLGHVPRL TRVEWGVIRS SLGRPRRFSE QFLKEEKEKL NQYRESVRTH  660
YAELNAGTRE GLPTDLARPL SVGQHVIAFH PRAREIHNGI VLTVDHSRCS VQFDQPELGV  720
EYIMDVDCMP LHPAENLPAS FRKHNVTVNR YIENLKELKI NEQLKEGTTK GYMKISSSDK  780
LVSTGVPGYI LPSNHRINKS SKQTGVKSSS FNVQAKVGPG ETASTRVANY QPSIPAQTQA  840
KEADVQAIYE LTRALDKKEA VVSELRRMND EVFENQRDED NSIRDSEPFK KEYAAVLLQL  900
SQVNDQVSSA LLCLRQRNTY RGSSPHTVVK TMDNLSGPGS LSNSYGYSCD VQESASHMRE  960
IVESSRAKAH KMVDAAMQAF SSLRKENNFD KIEEVIDFVS NRLSDDAGML AMGSSTTLAD  1020
PIPFSQDQLT SCTSKPLATG CAHDPPKSNN LSNQSEEKLL SDLIVNCVAA FMMIQTCTAR  1080
QFPPADVAQV LDHAVTSLQP FCPQNLSVYG EIQKCMGIIR NQIMALVPT*

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed ubiquitously in vegetative and reproductive tissues. {ECO:0000269\|PubMed:15246533}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Prupe.1G139300.4.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020426231.1	0.0	protein ALWAYS EARLY 3 isoform X1
Swissprot	Q6A332	0.0	ALY3_ARATH; Protein ALWAYS EARLY 3
TrEMBL	A0A251QY03	0.0	A0A251QY03_PRUPE; Uncharacterized protein
STRING	EMJ28562	0.0	(Prunus persica)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G21430.2	0.0	DNA binding

Link Out ? help Back to Top
Phytozome	Prupe.1G139300.4.p
Entrez Gene	18793507

Publications ? help Back to Top
Pfaff C, et al. ALY RNA-Binding Proteins Are Required for Nucleocytosolic mRNA Transport and Modulate Plant Growth and Development. Plant Physiol., 2018. 177(1): p. 226-240 [PMID:29540591]