PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.1G125700.4.p
Organism
Prunus persica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family FAR1
Protein Properties Length: 536aa    MW: 62033.3 Da    PI: 8.097
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.1G125700.4.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR166.38.3e-2173166190
                FAR1   1 kfYneYAkevGFsvrkskskks.krngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek...dgkwevtkleleHnH 87 
                         +fY+++Ak++GFs+r+++++ +    + +t+r+f+C + g+++ + +++ k +r+r+++r+gC+a +++ k+      +w+vt +++ HnH
  Prupe.1G125700.4.p  73 EFYCSFAKQCGFSIRRHRTRGKdGVGRGVTRRDFTCHRGGYPQMKPSEDGKMQRNRKSSRCGCQAYMRIVKRAdfdVPEWRVTGFSNIHNH 163
                         6***************9998874556679*******************9*******************98887676789************ PP

                FAR1  88 ela 90 
                         el 
  Prupe.1G125700.4.p 164 ELL 166
                         *96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031018.8E-1873166IPR004330FAR1 DNA binding domain
PfamPF105511.4E-22289381IPR018289MULE transposase domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 536 aa     Download sequence    Send to blast
MRFLRELLKK SKCVGDHSSK MSEGTSLGME DLSQDDIGTI EETAEDTILS RQTSVNLVPF  60
VGQRFVSQEA AYEFYCSFAK QCGFSIRRHR TRGKDGVGRG VTRRDFTCHR GGYPQMKPSE  120
DGKMQRNRKS SRCGCQAYMR IVKRADFDVP EWRVTGFSNI HNHELLKSNE VRLLPAYCSI  180
STDDKSRICM FAKAGMSVRQ MLRLMELEKG VKLGCLPFTE IDVRNLLQSF RNVDRDNDAI  240
DLIAMCKKMK DENPNFKYEF KIDGHNRLEH IAWSYASSVQ LYEAFGDTTV FDTTHRLDAY  300
DMLLGIWLGV DNHGMTCFFG CVLLRDENIQ SFSWALKTFL GFMKGKAPQT MLTDHNMWLK  360
EAIAVDVPQS KHAFCIWHIV AKFSDWFSVL LGSRYDDWKA EFHRLFNLDF VEDFEERWRE  420
MVNEFGLHTN KHVISLYALR NFWALAYLRH YFFAEMMSTS QAESINAFIQ RFLSAQSQLD  480
RFVEQVRNLL LLCYFPFLAS GSLLNYLTLS LFLVQPLVLM LNKHAYPFKL PFAGS*
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in hypocotyls, rosette and cauline leaves, inflorescences stems, flowers and siliques. {ECO:0000269|PubMed:15591448}.
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription activator involved in regulating light control of development.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPrupe.1G125700.4.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269|PubMed:15591448}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020410484.10.0protein FAR1-RELATED SEQUENCE 11 isoform X1
RefseqXP_020410485.10.0protein FAR1-RELATED SEQUENCE 11 isoform X1
SwissprotQ9SY660.0FRS11_ARATH; Protein FAR1-RELATED SEQUENCE 11
TrEMBLA0A251QWL00.0A0A251QWL0_PRUPE; Uncharacterized protein
STRINGEMJ264070.0(Prunus persica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10240.10.0FAR1-related sequence 11
Publications ? help Back to Top
  1. Joly-Lopez Z, et al.
    Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements.
    Front Plant Sci, 2017. 8: p. 2027
    [PMID:29250089]