PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Prupe.1G122800.8.p

Organism

Prunus persica

Taxonomic ID

3760

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus

Family

CAMTA

Protein Properties

Length: 645aa MW: 72436 Da PI: 6.2572

Description

CAMTA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Prupe.1G122800.8.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CG-1	166.4	4.6e-52	26	142	3	118
CG-1 3 ke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenp 92 +e k+rwl+++ei+aiL n++ +++ ++ + pksg+++L++rk++r+frkDG++wkkkkdgktv+E+he+LKvg+ e +++yYah+e+ p Prupe.1G122800.8.p 26 EEaKSRWLRPNEIHAILYNYKYFTIYVKPVNLPKSGTIVLFDRKMLRNFRKDGHNWKKKKDGKTVKEAHEHLKVGNEERIHVYYAHGEDSP 116 4559************************************************************************************* PP CG-1 93 tfqrrcywlLeeelekivlvhylevk 118 tf rrcywlL+++le+ivlvhy+e++ Prupe.1G122800.8.p 117 TFVRRCYWLLDKSLEHIVLVHYRETQ 142 *********************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51437	76.888	21	147	IPR005559	CG-1 DNA-binding domain
SMART	SM01076	5.7E-77	24	142	IPR005559	CG-1 DNA-binding domain
Pfam	PF03859	4.1E-46	27	140	IPR005559	CG-1 DNA-binding domain
SuperFamily	SSF81296	8.4E-14	366	453	IPR014756	Immunoglobulin E-set
SuperFamily	SSF48403	1.23E-7	549	614	IPR020683	Ankyrin repeat-containing domain
CDD	cd00204	1.71E-4	550	615	No hit	No description
Gene3D	G3DSA:1.25.40.20	2.4E-6	551	614	IPR020683	Ankyrin repeat-containing domain
PROSITE profile	PS50297	8.959	568	615	IPR020683	Ankyrin repeat-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 645 aa Download sequence Send to blast
MEKQLGGSEI HGFHTMQDLD VGTIMEEAKS RWLRPNEIHA ILYNYKYFTI YVKPVNLPKS 60 GTIVLFDRKM LRNFRKDGHN WKKKKDGKTV KEAHEHLKVG NEERIHVYYA HGEDSPTFVR 120 RCYWLLDKSL EHIVLVHYRE TQELQGSPVT PVNSNNSSSV SDPSAPWLLS EELDSGANTT 180 FCAGENELSE PGDGLTVKNH EKRLHDINTL EWEELLITND SKGDIVSCYD QQNQVVGNGF 240 ISGGASVISA EMSAFGNLTN PTLRSDDVQF NLPDSPYVPT VEYDVNSNVQ IRDSIAKTTC 300 DSLDVLVNDG LHSQDSFGRW INQVMADPPG SVEDPALESS SIAAQNSFAS PSADHLQSSI 360 PHQIFNITDL SPAWAFSNEK TKILITGFFH QEYLHLAKSD LLCICGDVCL RAEIVQAGVY 420 RCFVPPHLPR VVNLFMSIDG HKPISLVLNF EYRAPVLSDP IISSEENNWE EFQAQMRLAY 480 LLFSSSKSLN IVSNKVSLNA LKEAKKFSHR TSHISNSWAC LMKAVEDKKS PLPLAKDGLF 540 ELILKNRLKD WLLEKVVDSS TTKEYDAYGQ GVIHLCAILE YTWAVRLFSW SGLSLDFRDR 600 RGWTALHWAA YCGRLLFGDS KCGGSTVKFF GQLECLRKLF CGGV*

Sequence ? help Back to Top

Protein Sequence Length: 645 aa Download sequence Send to blast

MEKQLGGSEI HGFHTMQDLD VGTIMEEAKS RWLRPNEIHA ILYNYKYFTI YVKPVNLPKS  60
GTIVLFDRKM LRNFRKDGHN WKKKKDGKTV KEAHEHLKVG NEERIHVYYA HGEDSPTFVR  120
RCYWLLDKSL EHIVLVHYRE TQELQGSPVT PVNSNNSSSV SDPSAPWLLS EELDSGANTT  180
FCAGENELSE PGDGLTVKNH EKRLHDINTL EWEELLITND SKGDIVSCYD QQNQVVGNGF  240
ISGGASVISA EMSAFGNLTN PTLRSDDVQF NLPDSPYVPT VEYDVNSNVQ IRDSIAKTTC  300
DSLDVLVNDG LHSQDSFGRW INQVMADPPG SVEDPALESS SIAAQNSFAS PSADHLQSSI  360
PHQIFNITDL SPAWAFSNEK TKILITGFFH QEYLHLAKSD LLCICGDVCL RAEIVQAGVY  420
RCFVPPHLPR VVNLFMSIDG HKPISLVLNF EYRAPVLSDP IISSEENNWE EFQAQMRLAY  480
LLFSSSKSLN IVSNKVSLNA LKEAKKFSHR TSHISNSWAC LMKAVEDKKS PLPLAKDGLF  540
ELILKNRLKD WLLEKVVDSS TTKEYDAYGQ GVIHLCAILE YTWAVRLFSW SGLSLDFRDR  600
RGWTALHWAA YCGRLLFGDS KCGGSTVKFF GQLECLRKLF CGGV*

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in roots, stems, leaves, pollen, top of sepals and siliques. {ECO:0000269\|PubMed:12218065, ECO:0000269\|PubMed:14581622}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator (PubMed:14581622). Binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3' (By similarity). Regulates transcriptional activity in response to calcium signals (Probable). Binds calmodulin in a calcium-dependent manner (By similarity). Involved in response to cold. Contributes together with CAMTA3 to the positive regulation of the cold-induced expression of DREB1A/CBF3, DREB1B/CBF1 and DREB1C/CBF2 (PubMed:28351986). {ECO:0000250\|UniProtKB:Q8GSA7, ECO:0000269\|PubMed:14581622, ECO:0000269\|PubMed:28351986, ECO:0000305\|PubMed:11925432}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00435	DAP	Transfer from AT4G16150	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Prupe.1G122800.8.p

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By heat shock, UVB, wounding, abscisic acid, H(2)O(2) and salicylic acid. {ECO:0000269\|PubMed:12218065}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020409879.1	0.0	calmodulin-binding transcription activator 5 isoform X1
Swissprot	O23463	0.0	CMTA5_ARATH; Calmodulin-binding transcription activator 5
TrEMBL	A0A251QW89	0.0	A0A251QW89_PRUPE; Uncharacterized protein
STRING	XP_008223308.1	0.0	(Prunus mume)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G16150.1	0.0	calmodulin binding;transcription regulators

Link Out ? help Back to Top
Phytozome	Prupe.1G122800.8.p

Publications ? help Back to Top
Ye J, et al. Arabidopsis formin3 directs the formation of actin cables and polarized growth in pollen tubes. Plant Cell, 2009. 21(12): p. 3868-84 [PMID:20023198] Kidokoro S, et al. Different Cold-Signaling Pathways Function in the Responses to Rapid and Gradual Decreases in Temperature. Plant Cell, 2017. 29(4): p. 760-774 [PMID:28351986] Lan Y,Liu X,Fu Y,Huang S Arabidopsis class I formins control membrane-originated actin polymerization at pollen tube tips. PLoS Genet., 2018. 14(11): p. e1007789 [PMID:30418966]