PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Prupe.1G122800.6.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
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Family | CAMTA | ||||||||
Protein Properties | Length: 601aa MW: 67142.9 Da PI: 6.1239 | ||||||||
Description | CAMTA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | CG-1 | 136.3 | 1e-42 | 15 | 100 | 33 | 118 |
CG-1 33 rpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptfqrrcywlLeeelekivlvhylevk 118 + + g+++L++rk++r+frkDG++wkkkkdgktv+E+he+LKvg+ e +++yYah+e+ ptf rrcywlL+++le+ivlvhy+e++ Prupe.1G122800.6.p 15 TMQGGTIVLFDRKMLRNFRKDGHNWKKKKDGKTVKEAHEHLKVGNEERIHVYYAHGEDSPTFVRRCYWLLDKSLEHIVLVHYRETQ 100 5689*******************************************************************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01076 | 7.4E-46 | 1 | 100 | IPR005559 | CG-1 DNA-binding domain |
PROSITE profile | PS51437 | 61.121 | 1 | 105 | IPR005559 | CG-1 DNA-binding domain |
Pfam | PF03859 | 5.8E-36 | 17 | 98 | IPR005559 | CG-1 DNA-binding domain |
Gene3D | G3DSA:2.60.40.10 | 0.001 | 321 | 412 | IPR013783 | Immunoglobulin-like fold |
SuperFamily | SSF81296 | 7.46E-14 | 322 | 409 | IPR014756 | Immunoglobulin E-set |
CDD | cd00204 | 1.42E-4 | 506 | 571 | No hit | No description |
Gene3D | G3DSA:1.25.40.20 | 2.1E-6 | 507 | 570 | IPR020683 | Ankyrin repeat-containing domain |
SuperFamily | SSF48403 | 9.79E-8 | 516 | 570 | IPR020683 | Ankyrin repeat-containing domain |
PROSITE profile | PS50297 | 8.959 | 524 | 571 | IPR020683 | Ankyrin repeat-containing domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 601 aa Download sequence Send to blast |
MEKQLGGSEI HGFHTMQGGT IVLFDRKMLR NFRKDGHNWK KKKDGKTVKE AHEHLKVGNE 60 ERIHVYYAHG EDSPTFVRRC YWLLDKSLEH IVLVHYRETQ EGSPVTPVNS NNSSSVSDPS 120 APWLLSEELD SGANTTFCAG ENELSEPGDG LTVKNHEKRL HDINTLEWEE LLITNDSKGD 180 IVSCYDQQNQ VVGNGFISGG ASVISAEMSA FGNLTNPTLR SDDVQFNLPD SPYVPTVEYD 240 VNSNVQIRDS IAKTTCDSLD VLVNDGLHSQ DSFGRWINQV MADPPGSVED PALESSSIAA 300 QNSFASPSAD HLQSSIPHQI FNITDLSPAW AFSNEKTKIL ITGFFHQEYL HLAKSDLLCI 360 CGDVCLRAEI VQAGVYRCFV PPHLPRVVNL FMSIDGHKPI SLVLNFEYRA PVLSDPIISS 420 EENNWEEFQA QMRLAYLLFS SSKSLNIVSN KVSLNALKEA KKFSHRTSHI SNSWACLMKA 480 VEDKKSPLPL AKDGLFELIL KNRLKDWLLE KVVDSSTTKE YDAYGQGVIH LCAILEYTWA 540 VRLFSWSGLS LDFRDRRGWT ALHWAAYCGR LLFGDSKCGG STVKFFGQLE CLRKLFCGGV 600 * |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in roots, stems, leaves, pollen, top of sepals and siliques. {ECO:0000269|PubMed:12218065, ECO:0000269|PubMed:14581622}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator (PubMed:14581622). Binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3' (By similarity). Regulates transcriptional activity in response to calcium signals (Probable). Binds calmodulin in a calcium-dependent manner (By similarity). Involved in response to cold. Contributes together with CAMTA3 to the positive regulation of the cold-induced expression of DREB1A/CBF3, DREB1B/CBF1 and DREB1C/CBF2 (PubMed:28351986). {ECO:0000250|UniProtKB:Q8GSA7, ECO:0000269|PubMed:14581622, ECO:0000269|PubMed:28351986, ECO:0000305|PubMed:11925432}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00435 | DAP | Transfer from AT4G16150 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Prupe.1G122800.6.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By heat shock, UVB, wounding, abscisic acid, H(2)O(2) and salicylic acid. {ECO:0000269|PubMed:12218065}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020409880.1 | 0.0 | calmodulin-binding transcription activator 5 isoform X2 | ||||
Swissprot | O23463 | 0.0 | CMTA5_ARATH; Calmodulin-binding transcription activator 5 | ||||
TrEMBL | A0A251QW86 | 0.0 | A0A251QW86_PRUPE; Uncharacterized protein | ||||
STRING | XP_008223308.1 | 0.0 | (Prunus mume) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G16150.1 | 0.0 | calmodulin binding;transcription regulators |
Link Out ? help Back to Top | |
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Phytozome | Prupe.1G122800.6.p |
Publications ? help Back to Top | |||
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