PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Prupe.1G122800.5.p

Organism

Prunus persica

Taxonomic ID

3760

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus

Family

CAMTA

Protein Properties

Length: 603aa MW: 67384.1 Da PI: 6.1239

Description

CAMTA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Prupe.1G122800.5.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CG-1	136.3	1e-42	15	100	33	118
CG-1 33 rpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptfqrrcywlLeeelekivlvhylevk 118 + + g+++L++rk++r+frkDG++wkkkkdgktv+E+he+LKvg+ e +++yYah+e+ ptf rrcywlL+++le+ivlvhy+e++ Prupe.1G122800.5.p 15 TMQGGTIVLFDRKMLRNFRKDGHNWKKKKDGKTVKEAHEHLKVGNEERIHVYYAHGEDSPTFVRRCYWLLDKSLEHIVLVHYRETQ 100 5689*******************************************************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM01076	7.4E-46	1	100	IPR005559	CG-1 DNA-binding domain
PROSITE profile	PS51437	60.918	1	105	IPR005559	CG-1 DNA-binding domain
Pfam	PF03859	5.8E-36	17	98	IPR005559	CG-1 DNA-binding domain
Gene3D	G3DSA:2.60.40.10	0.001	323	414	IPR013783	Immunoglobulin-like fold
SuperFamily	SSF81296	7.46E-14	324	411	IPR014756	Immunoglobulin E-set
CDD	cd00204	1.43E-4	508	573	No hit	No description
Gene3D	G3DSA:1.25.40.20	2.1E-6	509	572	IPR020683	Ankyrin repeat-containing domain
SuperFamily	SSF48403	9.95E-8	518	572	IPR020683	Ankyrin repeat-containing domain
PROSITE profile	PS50297	8.959	526	573	IPR020683	Ankyrin repeat-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 603 aa Download sequence Send to blast
MEKQLGGSEI HGFHTMQGGT IVLFDRKMLR NFRKDGHNWK KKKDGKTVKE AHEHLKVGNE 60 ERIHVYYAHG EDSPTFVRRC YWLLDKSLEH IVLVHYRETQ ELQGSPVTPV NSNNSSSVSD 120 PSAPWLLSEE LDSGANTTFC AGENELSEPG DGLTVKNHEK RLHDINTLEW EELLITNDSK 180 GDIVSCYDQQ NQVVGNGFIS GGASVISAEM SAFGNLTNPT LRSDDVQFNL PDSPYVPTVE 240 YDVNSNVQIR DSIAKTTCDS LDVLVNDGLH SQDSFGRWIN QVMADPPGSV EDPALESSSI 300 AAQNSFASPS ADHLQSSIPH QIFNITDLSP AWAFSNEKTK ILITGFFHQE YLHLAKSDLL 360 CICGDVCLRA EIVQAGVYRC FVPPHLPRVV NLFMSIDGHK PISLVLNFEY RAPVLSDPII 420 SSEENNWEEF QAQMRLAYLL FSSSKSLNIV SNKVSLNALK EAKKFSHRTS HISNSWACLM 480 KAVEDKKSPL PLAKDGLFEL ILKNRLKDWL LEKVVDSSTT KEYDAYGQGV IHLCAILEYT 540 WAVRLFSWSG LSLDFRDRRG WTALHWAAYC GRLLFGDSKC GGSTVKFFGQ LECLRKLFCG 600 GV*

Sequence ? help Back to Top

Protein Sequence Length: 603 aa Download sequence Send to blast

MEKQLGGSEI HGFHTMQGGT IVLFDRKMLR NFRKDGHNWK KKKDGKTVKE AHEHLKVGNE  60
ERIHVYYAHG EDSPTFVRRC YWLLDKSLEH IVLVHYRETQ ELQGSPVTPV NSNNSSSVSD  120
PSAPWLLSEE LDSGANTTFC AGENELSEPG DGLTVKNHEK RLHDINTLEW EELLITNDSK  180
GDIVSCYDQQ NQVVGNGFIS GGASVISAEM SAFGNLTNPT LRSDDVQFNL PDSPYVPTVE  240
YDVNSNVQIR DSIAKTTCDS LDVLVNDGLH SQDSFGRWIN QVMADPPGSV EDPALESSSI  300
AAQNSFASPS ADHLQSSIPH QIFNITDLSP AWAFSNEKTK ILITGFFHQE YLHLAKSDLL  360
CICGDVCLRA EIVQAGVYRC FVPPHLPRVV NLFMSIDGHK PISLVLNFEY RAPVLSDPII  420
SSEENNWEEF QAQMRLAYLL FSSSKSLNIV SNKVSLNALK EAKKFSHRTS HISNSWACLM  480
KAVEDKKSPL PLAKDGLFEL ILKNRLKDWL LEKVVDSSTT KEYDAYGQGV IHLCAILEYT  540
WAVRLFSWSG LSLDFRDRRG WTALHWAAYC GRLLFGDSKC GGSTVKFFGQ LECLRKLFCG  600
GV*

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in roots, stems, leaves, pollen, top of sepals and siliques. {ECO:0000269\|PubMed:12218065, ECO:0000269\|PubMed:14581622}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator (PubMed:14581622). Binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3' (By similarity). Regulates transcriptional activity in response to calcium signals (Probable). Binds calmodulin in a calcium-dependent manner (By similarity). Involved in response to cold. Contributes together with CAMTA3 to the positive regulation of the cold-induced expression of DREB1A/CBF3, DREB1B/CBF1 and DREB1C/CBF2 (PubMed:28351986). {ECO:0000250\|UniProtKB:Q8GSA7, ECO:0000269\|PubMed:14581622, ECO:0000269\|PubMed:28351986, ECO:0000305\|PubMed:11925432}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00435	DAP	Transfer from AT4G16150	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Prupe.1G122800.5.p

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By heat shock, UVB, wounding, abscisic acid, H(2)O(2) and salicylic acid. {ECO:0000269\|PubMed:12218065}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020409879.1	0.0	calmodulin-binding transcription activator 5 isoform X1
Swissprot	O23463	0.0	CMTA5_ARATH; Calmodulin-binding transcription activator 5
TrEMBL	A0A251QXA8	0.0	A0A251QXA8_PRUPE; Uncharacterized protein
STRING	XP_008223308.1	0.0	(Prunus mume)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G16150.1	0.0	calmodulin binding;transcription regulators

Link Out ? help Back to Top
Phytozome	Prupe.1G122800.5.p

Publications ? help Back to Top
Ye J, et al. Arabidopsis formin3 directs the formation of actin cables and polarized growth in pollen tubes. Plant Cell, 2009. 21(12): p. 3868-84 [PMID:20023198] Kidokoro S, et al. Different Cold-Signaling Pathways Function in the Responses to Rapid and Gradual Decreases in Temperature. Plant Cell, 2017. 29(4): p. 760-774 [PMID:28351986] Lan Y,Liu X,Fu Y,Huang S Arabidopsis class I formins control membrane-originated actin polymerization at pollen tube tips. PLoS Genet., 2018. 14(11): p. e1007789 [PMID:30418966]