PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Prupe.1G122800.4.p

Organism

Prunus persica

Taxonomic ID

3760

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus

Family

CAMTA

Protein Properties

Length: 913aa MW: 102960 Da PI: 7.084

Description

CAMTA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Prupe.1G122800.4.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CG-1	165.7	7.7e-52	26	142	3	118
CG-1 3 ke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenp 92 +e k+rwl+++ei+aiL n++ +++ ++ + pksg+++L++rk++r+frkDG++wkkkkdgktv+E+he+LKvg+ e +++yYah+e+ p Prupe.1G122800.4.p 26 EEaKSRWLRPNEIHAILYNYKYFTIYVKPVNLPKSGTIVLFDRKMLRNFRKDGHNWKKKKDGKTVKEAHEHLKVGNEERIHVYYAHGEDSP 116 4559************************************************************************************* PP CG-1 93 tfqrrcywlLeeelekivlvhylevk 118 tf rrcywlL+++le+ivlvhy+e++ Prupe.1G122800.4.p 117 TFVRRCYWLLDKSLEHIVLVHYRETQ 142 *********************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51437	77.091	21	147	IPR005559	CG-1 DNA-binding domain
SMART	SM01076	5.7E-77	24	142	IPR005559	CG-1 DNA-binding domain
Pfam	PF03859	6.8E-46	27	140	IPR005559	CG-1 DNA-binding domain
SuperFamily	SSF81296	1.35E-13	364	451	IPR014756	Immunoglobulin E-set
CDD	cd00204	6.87E-14	524	658	No hit	No description
Gene3D	G3DSA:1.25.40.20	8.4E-17	548	661	IPR020683	Ankyrin repeat-containing domain
Pfam	PF12796	5.3E-7	549	628	IPR020683	Ankyrin repeat-containing domain
SuperFamily	SSF48403	4.82E-17	561	661	IPR020683	Ankyrin repeat-containing domain
PROSITE profile	PS50297	15.777	566	670	IPR020683	Ankyrin repeat-containing domain
SMART	SM00248	9.2E-6	599	628	IPR002110	Ankyrin repeat
PROSITE profile	PS50088	11.621	599	631	IPR002110	Ankyrin repeat
SMART	SM00248	1500	638	668	IPR002110	Ankyrin repeat
PROSITE profile	PS50096	7.73	747	773	IPR000048	IQ motif, EF-hand binding site
SMART	SM00015	26	762	784	IPR000048	IQ motif, EF-hand binding site
PROSITE profile	PS50096	7.053	763	792	IPR000048	IQ motif, EF-hand binding site
SMART	SM00015	0.022	785	807	IPR000048	IQ motif, EF-hand binding site
PROSITE profile	PS50096	10.164	786	810	IPR000048	IQ motif, EF-hand binding site
Pfam	PF00612	8.2E-4	787	807	IPR000048	IQ motif, EF-hand binding site
SMART	SM00015	46	865	887	IPR000048	IQ motif, EF-hand binding site
PROSITE profile	PS50096	7.199	866	895	IPR000048	IQ motif, EF-hand binding site

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 913 aa Download sequence Send to blast
MEKQLGGSEI HGFHTMQDLD VGTIMEEAKS RWLRPNEIHA ILYNYKYFTI YVKPVNLPKS 60 GTIVLFDRKM LRNFRKDGHN WKKKKDGKTV KEAHEHLKVG NEERIHVYYA HGEDSPTFVR 120 RCYWLLDKSL EHIVLVHYRE TQEGSPVTPV NSNNSSSVSD PSAPWLLSEE LDSGANTTFC 180 AGENELSEPG DGLTVKNHEK RLHDINTLEW EELLITNDSK GDIVSCYDQQ NQVVGNGFIS 240 GGASVISAEM SAFGNLTNPT LRSDDVQFNL PDSPYVPTVE YDVNSNVQIR DSIAKTTCDS 300 LDVLVNDGLH SQDSFGRWIN QVMADPPGSV EDPALESSSI AAQNSFASPS ADHLQSSIPH 360 QIFNITDLSP AWAFSNEKTK ILITGFFHQE YLHLAKSDLL CICGDVCLRA EIVQAGVYRC 420 FVPPHLPRVV NLFMSIDGHK PISLVLNFEY RAPVLSDPII SSEENNWEEF QAQMRLAYLL 480 FSSSKSLNIV SNKVSLNALK EAKKFSHRTS HISNSWACLM KAVEDKKSPL PLAKDGLFEL 540 ILKNRLKDWL LEKVVDSSTT KEYDAYGQGV IHLCAILEYT WAVRLFSWSG LSLDFRDRRG 600 WTALHWAAYC GREKMVAVLL SAGAKPNLVT DPSSENPGGY TAADLAAMKG YDGLAAYLSE 660 KALVEQFKDM SIAGNASGSL QTSSNYGGNS ENLSEDEIHL KDTLAAYRTA ADAAARIQAA 720 FRENSLKLKA KAVQYSTPEA EARGIIAALK IQHAFRNYDT RKKIKAAARI QYRFRTWKMR 780 QEFLSLRRQA IKIQAAFRGF QVRRQYRKVL WSVGVLEKAV LRWRLKRRGL RGLNVAPVEV 840 DVDQKQESDT EEDFYRASRK QAEERIERSV VRVQAMFRSK KAQEEYSRMK LTHIEAKLEF 900 EELLDPDSNM DS*

Sequence ? help Back to Top

Protein Sequence Length: 913 aa Download sequence Send to blast

MEKQLGGSEI HGFHTMQDLD VGTIMEEAKS RWLRPNEIHA ILYNYKYFTI YVKPVNLPKS  60
GTIVLFDRKM LRNFRKDGHN WKKKKDGKTV KEAHEHLKVG NEERIHVYYA HGEDSPTFVR  120
RCYWLLDKSL EHIVLVHYRE TQEGSPVTPV NSNNSSSVSD PSAPWLLSEE LDSGANTTFC  180
AGENELSEPG DGLTVKNHEK RLHDINTLEW EELLITNDSK GDIVSCYDQQ NQVVGNGFIS  240
GGASVISAEM SAFGNLTNPT LRSDDVQFNL PDSPYVPTVE YDVNSNVQIR DSIAKTTCDS  300
LDVLVNDGLH SQDSFGRWIN QVMADPPGSV EDPALESSSI AAQNSFASPS ADHLQSSIPH  360
QIFNITDLSP AWAFSNEKTK ILITGFFHQE YLHLAKSDLL CICGDVCLRA EIVQAGVYRC  420
FVPPHLPRVV NLFMSIDGHK PISLVLNFEY RAPVLSDPII SSEENNWEEF QAQMRLAYLL  480
FSSSKSLNIV SNKVSLNALK EAKKFSHRTS HISNSWACLM KAVEDKKSPL PLAKDGLFEL  540
ILKNRLKDWL LEKVVDSSTT KEYDAYGQGV IHLCAILEYT WAVRLFSWSG LSLDFRDRRG  600
WTALHWAAYC GREKMVAVLL SAGAKPNLVT DPSSENPGGY TAADLAAMKG YDGLAAYLSE  660
KALVEQFKDM SIAGNASGSL QTSSNYGGNS ENLSEDEIHL KDTLAAYRTA ADAAARIQAA  720
FRENSLKLKA KAVQYSTPEA EARGIIAALK IQHAFRNYDT RKKIKAAARI QYRFRTWKMR  780
QEFLSLRRQA IKIQAAFRGF QVRRQYRKVL WSVGVLEKAV LRWRLKRRGL RGLNVAPVEV  840
DVDQKQESDT EEDFYRASRK QAEERIERSV VRVQAMFRSK KAQEEYSRMK LTHIEAKLEF  900
EELLDPDSNM DS*

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in roots, stems, leaves, pollen, top of sepals and siliques. {ECO:0000269\|PubMed:12218065, ECO:0000269\|PubMed:14581622}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator (PubMed:14581622). Binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3' (By similarity). Regulates transcriptional activity in response to calcium signals (Probable). Binds calmodulin in a calcium-dependent manner (By similarity). Involved in response to cold. Contributes together with CAMTA3 to the positive regulation of the cold-induced expression of DREB1A/CBF3, DREB1B/CBF1 and DREB1C/CBF2 (PubMed:28351986). {ECO:0000250\|UniProtKB:Q8GSA7, ECO:0000269\|PubMed:14581622, ECO:0000269\|PubMed:28351986, ECO:0000305\|PubMed:11925432}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00435	DAP	Transfer from AT4G16150	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Prupe.1G122800.4.p

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By heat shock, UVB, wounding, abscisic acid, H(2)O(2) and salicylic acid. {ECO:0000269\|PubMed:12218065}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020409880.1	0.0	calmodulin-binding transcription activator 5 isoform X2
Swissprot	O23463	0.0	CMTA5_ARATH; Calmodulin-binding transcription activator 5
TrEMBL	A0A251QWG2	0.0	A0A251QWG2_PRUPE; Uncharacterized protein
STRING	XP_008223308.1	0.0	(Prunus mume)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G16150.1	0.0	calmodulin binding;transcription regulators

Link Out ? help Back to Top
Phytozome	Prupe.1G122800.4.p

Publications ? help Back to Top
Ye J, et al. Arabidopsis formin3 directs the formation of actin cables and polarized growth in pollen tubes. Plant Cell, 2009. 21(12): p. 3868-84 [PMID:20023198] Kidokoro S, et al. Different Cold-Signaling Pathways Function in the Responses to Rapid and Gradual Decreases in Temperature. Plant Cell, 2017. 29(4): p. 760-774 [PMID:28351986] Lan Y,Liu X,Fu Y,Huang S Arabidopsis class I formins control membrane-originated actin polymerization at pollen tube tips. PLoS Genet., 2018. 14(11): p. e1007789 [PMID:30418966]