PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Prupe.1G122800.2.p

Organism

Prunus persica

Taxonomic ID

3760

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus

Family

CAMTA

Protein Properties

Length: 871aa MW: 97907.7 Da PI: 6.9774

Description

CAMTA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Prupe.1G122800.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CG-1	135.3	2.1e-42	15	100	33	118
CG-1 33 rpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptfqrrcywlLeeelekivlvhylevk 118 + + g+++L++rk++r+frkDG++wkkkkdgktv+E+he+LKvg+ e +++yYah+e+ ptf rrcywlL+++le+ivlvhy+e++ Prupe.1G122800.2.p 15 TMQGGTIVLFDRKMLRNFRKDGHNWKKKKDGKTVKEAHEHLKVGNEERIHVYYAHGEDSPTFVRRCYWLLDKSLEHIVLVHYRETQ 100 5689*******************************************************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51437	61.121	1	105	IPR005559	CG-1 DNA-binding domain
SMART	SM01076	7.4E-46	1	100	IPR005559	CG-1 DNA-binding domain
Pfam	PF03859	9.7E-36	17	98	IPR005559	CG-1 DNA-binding domain
SuperFamily	SSF81296	1.26E-13	322	409	IPR014756	Immunoglobulin E-set
CDD	cd00204	5.21E-14	482	616	No hit	No description
Gene3D	G3DSA:1.25.40.20	7.7E-17	506	619	IPR020683	Ankyrin repeat-containing domain
Pfam	PF12796	4.9E-7	507	586	IPR020683	Ankyrin repeat-containing domain
SuperFamily	SSF48403	4.51E-17	519	619	IPR020683	Ankyrin repeat-containing domain
PROSITE profile	PS50297	15.777	524	628	IPR020683	Ankyrin repeat-containing domain
SMART	SM00248	9.2E-6	557	586	IPR002110	Ankyrin repeat
PROSITE profile	PS50088	11.621	557	589	IPR002110	Ankyrin repeat
SMART	SM00248	1500	596	626	IPR002110	Ankyrin repeat
PROSITE profile	PS50096	7.73	705	731	IPR000048	IQ motif, EF-hand binding site
SMART	SM00015	26	720	742	IPR000048	IQ motif, EF-hand binding site
PROSITE profile	PS50096	7.053	721	750	IPR000048	IQ motif, EF-hand binding site
SMART	SM00015	0.022	743	765	IPR000048	IQ motif, EF-hand binding site
PROSITE profile	PS50096	10.164	744	768	IPR000048	IQ motif, EF-hand binding site
Pfam	PF00612	7.7E-4	745	765	IPR000048	IQ motif, EF-hand binding site
SMART	SM00015	46	823	845	IPR000048	IQ motif, EF-hand binding site
PROSITE profile	PS50096	7.199	824	853	IPR000048	IQ motif, EF-hand binding site

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 871 aa Download sequence Send to blast
MEKQLGGSEI HGFHTMQGGT IVLFDRKMLR NFRKDGHNWK KKKDGKTVKE AHEHLKVGNE 60 ERIHVYYAHG EDSPTFVRRC YWLLDKSLEH IVLVHYRETQ EGSPVTPVNS NNSSSVSDPS 120 APWLLSEELD SGANTTFCAG ENELSEPGDG LTVKNHEKRL HDINTLEWEE LLITNDSKGD 180 IVSCYDQQNQ VVGNGFISGG ASVISAEMSA FGNLTNPTLR SDDVQFNLPD SPYVPTVEYD 240 VNSNVQIRDS IAKTTCDSLD VLVNDGLHSQ DSFGRWINQV MADPPGSVED PALESSSIAA 300 QNSFASPSAD HLQSSIPHQI FNITDLSPAW AFSNEKTKIL ITGFFHQEYL HLAKSDLLCI 360 CGDVCLRAEI VQAGVYRCFV PPHLPRVVNL FMSIDGHKPI SLVLNFEYRA PVLSDPIISS 420 EENNWEEFQA QMRLAYLLFS SSKSLNIVSN KVSLNALKEA KKFSHRTSHI SNSWACLMKA 480 VEDKKSPLPL AKDGLFELIL KNRLKDWLLE KVVDSSTTKE YDAYGQGVIH LCAILEYTWA 540 VRLFSWSGLS LDFRDRRGWT ALHWAAYCGR EKMVAVLLSA GAKPNLVTDP SSENPGGYTA 600 ADLAAMKGYD GLAAYLSEKA LVEQFKDMSI AGNASGSLQT SSNYGGNSEN LSEDEIHLKD 660 TLAAYRTAAD AAARIQAAFR ENSLKLKAKA VQYSTPEAEA RGIIAALKIQ HAFRNYDTRK 720 KIKAAARIQY RFRTWKMRQE FLSLRRQAIK IQAAFRGFQV RRQYRKVLWS VGVLEKAVLR 780 WRLKRRGLRG LNVAPVEVDV DQKQESDTEE DFYRASRKQA EERIERSVVR VQAMFRSKKA 840 QEEYSRMKLT HIEAKLEFEE LLDPDSNMDS *

Sequence ? help Back to Top

Protein Sequence Length: 871 aa Download sequence Send to blast

MEKQLGGSEI HGFHTMQGGT IVLFDRKMLR NFRKDGHNWK KKKDGKTVKE AHEHLKVGNE  60
ERIHVYYAHG EDSPTFVRRC YWLLDKSLEH IVLVHYRETQ EGSPVTPVNS NNSSSVSDPS  120
APWLLSEELD SGANTTFCAG ENELSEPGDG LTVKNHEKRL HDINTLEWEE LLITNDSKGD  180
IVSCYDQQNQ VVGNGFISGG ASVISAEMSA FGNLTNPTLR SDDVQFNLPD SPYVPTVEYD  240
VNSNVQIRDS IAKTTCDSLD VLVNDGLHSQ DSFGRWINQV MADPPGSVED PALESSSIAA  300
QNSFASPSAD HLQSSIPHQI FNITDLSPAW AFSNEKTKIL ITGFFHQEYL HLAKSDLLCI  360
CGDVCLRAEI VQAGVYRCFV PPHLPRVVNL FMSIDGHKPI SLVLNFEYRA PVLSDPIISS  420
EENNWEEFQA QMRLAYLLFS SSKSLNIVSN KVSLNALKEA KKFSHRTSHI SNSWACLMKA  480
VEDKKSPLPL AKDGLFELIL KNRLKDWLLE KVVDSSTTKE YDAYGQGVIH LCAILEYTWA  540
VRLFSWSGLS LDFRDRRGWT ALHWAAYCGR EKMVAVLLSA GAKPNLVTDP SSENPGGYTA  600
ADLAAMKGYD GLAAYLSEKA LVEQFKDMSI AGNASGSLQT SSNYGGNSEN LSEDEIHLKD  660
TLAAYRTAAD AAARIQAAFR ENSLKLKAKA VQYSTPEAEA RGIIAALKIQ HAFRNYDTRK  720
KIKAAARIQY RFRTWKMRQE FLSLRRQAIK IQAAFRGFQV RRQYRKVLWS VGVLEKAVLR  780
WRLKRRGLRG LNVAPVEVDV DQKQESDTEE DFYRASRKQA EERIERSVVR VQAMFRSKKA  840
QEEYSRMKLT HIEAKLEFEE LLDPDSNMDS *

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in roots, stems, leaves, pollen, top of sepals and siliques. {ECO:0000269\|PubMed:12218065, ECO:0000269\|PubMed:14581622}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator (PubMed:14581622). Binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3' (By similarity). Regulates transcriptional activity in response to calcium signals (Probable). Binds calmodulin in a calcium-dependent manner (By similarity). Involved in response to cold. Contributes together with CAMTA3 to the positive regulation of the cold-induced expression of DREB1A/CBF3, DREB1B/CBF1 and DREB1C/CBF2 (PubMed:28351986). {ECO:0000250\|UniProtKB:Q8GSA7, ECO:0000269\|PubMed:14581622, ECO:0000269\|PubMed:28351986, ECO:0000305\|PubMed:11925432}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00435	DAP	Transfer from AT4G16150	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Prupe.1G122800.2.p

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By heat shock, UVB, wounding, abscisic acid, H(2)O(2) and salicylic acid. {ECO:0000269\|PubMed:12218065}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020409880.1	0.0	calmodulin-binding transcription activator 5 isoform X2
Swissprot	O23463	0.0	CMTA5_ARATH; Calmodulin-binding transcription activator 5
TrEMBL	A0A251QZA2	0.0	A0A251QZA2_PRUPE; Uncharacterized protein
STRING	XP_008223308.1	0.0	(Prunus mume)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G16150.1	0.0	calmodulin binding;transcription regulators

Link Out ? help Back to Top
Phytozome	Prupe.1G122800.2.p

Publications ? help Back to Top
Ye J, et al. Arabidopsis formin3 directs the formation of actin cables and polarized growth in pollen tubes. Plant Cell, 2009. 21(12): p. 3868-84 [PMID:20023198] Kidokoro S, et al. Different Cold-Signaling Pathways Function in the Responses to Rapid and Gradual Decreases in Temperature. Plant Cell, 2017. 29(4): p. 760-774 [PMID:28351986] Lan Y,Liu X,Fu Y,Huang S Arabidopsis class I formins control membrane-originated actin polymerization at pollen tube tips. PLoS Genet., 2018. 14(11): p. e1007789 [PMID:30418966]