PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.1G111700.1.p
Common NamePRUPE_ppa025672mg
Organism
Prunus persica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family MYB
Protein Properties Length: 344aa    MW: 38329.1 Da    PI: 6.3144
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.1G111700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding57.33.5e-183784148
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                        rg+WT eEd+ l ++++ +G g+W++ ar+ g++Rt+k+c++rw++yl
  Prupe.1G111700.1.p 37 RGPWTVEEDLALMNYIANHGEGRWNSLARCAGLKRTGKSCRLRWLNYL 84
                        89********************************************97 PP
2Myb_DNA-binding51.13e-1690133146
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                         rg+ T eE++l+++++ ++G++ W++Ia++++ gRt++++k++w++
  Prupe.1G111700.1.p  90 RGNITLEEQLLILELHSRWGNR-WSKIAQHLP-GRTDNEIKNYWRT 133
                         7999******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.6633284IPR017930Myb domain
SuperFamilySSF466895.24E-3134131IPR009057Homeodomain-like
SMARTSM007171.8E-143686IPR001005SANT/Myb domain
PfamPF002493.2E-163784IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.608.9E-233891IPR009057Homeodomain-like
CDDcd001671.52E-113984No hitNo description
PROSITE profilePS5129423.24685139IPR017930Myb domain
SMARTSM007171.3E-1489137IPR001005SANT/Myb domain
PfamPF002496.0E-1590133IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.608.3E-2392138IPR009057Homeodomain-like
CDDcd001671.59E-7110133No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009620Biological Processresponse to fungus
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009737Biological Processresponse to abscisic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 344 aa     Download sequence    Send to blast
MDGVLGGGRG CNNSSSASAT IENDIHEEAE DQMDLRRGPW TVEEDLALMN YIANHGEGRW  60
NSLARCAGLK RTGKSCRLRW LNYLRPDVRR GNITLEEQLL ILELHSRWGN RWSKIAQHLP  120
GRTDNEIKNY WRTRVQKHAK QLKCDVNSKQ FKDTMRYLWM PRLVERIQAA AAASTAATNS  180
SITSATAAGA TSHHFNNNNN NNNTFQSSSG QMLLQPSHHF GASSHSHVTP SYTPDNSSTA  240
ASSDSFGAQV SPVSDLTDYY TPTTTATTTI SVNNNPTPDN YLVQANHQVG CYDQCFNPGL  300
GSEHFQGMEQ QENYQWGVDG GDISDNLWNV EDMWFLQEQL SNI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-24341374106B-MYB
1gv2_A2e-24341371103MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed specifically in flowers. Restricted to anthers in maturing flowers. Strongest expression in the vascular and connective tissue where the anther attaches to the filament. Not detected in pollen. {ECO:0000269|PubMed:19091873}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor contributing to the regulation of stamen maturation and male fertility in response to jasmonate signaling. Required for correct timing of anther dehiscence. Acts as a negative regulator of abscisic acid-induced cell death. Not involved in the regulation of BOI. Regulated by MYB21 and at a lower level by MYB24. Negatively regulated by the proteasome in an SCF(COI1) E3 ubiquitin-protein ligase complex-dependent manner. {ECO:0000269|PubMed:14555693, ECO:0000269|PubMed:19091873, ECO:0000269|PubMed:20921156, ECO:0000269|PubMed:23952703}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00334DAPTransfer from AT3G06490Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPrupe.1G111700.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by jasmonate and pathogen infection. {ECO:0000269|PubMed:14555693, ECO:0000269|PubMed:19091873}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9215770.0EU921577.1 Prunus mume clone GB-PrM-150 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007227100.10.0transcription factor MYB108
SwissprotQ9LDE13e-95MY108_ARATH; Transcription factor MYB108
TrEMBLM5XQV50.0M5XQV5_PRUPE; Uncharacterized protein
STRINGEMJ282990.0(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF87534125
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G06490.11e-89myb domain protein 108
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Cheng HQ, et al.
    The cotton MYB108 forms a positive feedback regulation loop with CML11 and participates in the defense response against Verticillium dahliae infection.
    J. Exp. Bot., 2016. 67(6): p. 1935-50
    [PMID:26873979]
  3. Sanz-Fernández M, et al.
    Screening Arabidopsis mutants in genes useful for phytoremediation.
    J. Hazard. Mater., 2017. 335: p. 143-151
    [PMID:28441590]
  4. Chou ML, et al.
    The Direct Involvement of Dark-Induced Tic55 Protein in Chlorophyll Catabolism and Its Indirect Role in the MYB108-NAC Signaling Pathway during Leaf Senescence in Arabidopsis thaliana.
    Int J Mol Sci, 2018.
    [PMID:29937503]