PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.1G101600.1.p
Common NamePRUPE_ppa023152mg
Organism
Prunus persica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family AP2
Protein Properties Length: 357aa    MW: 40250.8 Da    PI: 8.2649
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.1G101600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP249.51.1e-1547106155
                 AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng...kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                         s y+GV++++++gr++A+++d  ++n    k+ ++++lg ++ +e Aa a++ a++k++g
  Prupe.1G101600.1.p  47 SIYRGVTRHRWTGRYEAHLWDkNCWNEsqnKKgRQVYLGAYDDEEAAAHAYDLAALKYWG 106
                         57*******************999955656446*************************98 PP
2AP251.23e-16149200155
                 AP2   1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                         s+y+GV +++ +grW+A+I   +   g +k+ +lg++ t eeAa a++ a+ +++g
  Prupe.1G101600.1.p 149 SKYRGVARHHHNGRWEARIGRvF---G-NKYLYLGTYATQEEAATAYDMAAIEYRG 200
                         89****99**********99966...3.6*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008478.7E-1247106IPR001471AP2/ERF domain
CDDcd000186.68E-1147116No hitNo description
SuperFamilySSF541713.27E-1747116IPR016177DNA-binding domain
PROSITE profilePS5103220.3148114IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.4E-1648115IPR001471AP2/ERF domain
SMARTSM003802.8E-2748120IPR001471AP2/ERF domain
PRINTSPR003674.0E-64960IPR001471AP2/ERF domain
PfamPF008475.6E-12149200IPR001471AP2/ERF domain
SuperFamilySSF541711.05E-17149210IPR016177DNA-binding domain
CDDcd000184.43E-24149210No hitNo description
Gene3DG3DSA:3.30.730.101.1E-17150209IPR001471AP2/ERF domain
SMARTSM003801.2E-24150214IPR001471AP2/ERF domain
PROSITE profilePS5103218.334150208IPR001471AP2/ERF domain
PRINTSPR003674.0E-6190210IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 357 aa     Download sequence    Send to blast
MAKLSNQKTT AKNNIISNAN AANNTTVTKV KRTRRSVPRD SPPQRSSIYR GVTRHRWTGR  60
YEAHLWDKNC WNESQNKKGR QVYLGAYDDE EAAAHAYDLA ALKYWGQDTI LNFPLSTYPK  120
ELKEMEGQSR EEYIGSLRRK SSGFSRGVSK YRGVARHHHN GRWEARIGRV FGNKYLYLGT  180
YATQEEAATA YDMAAIEYRG LNAVTNFDLS RYIKWLKPNG PNNDISGQTK PNVEAILPNV  240
TQNPNDQERG LGFFNNLAYS PGETVVTTQL PRPTTATSAL GLLLQSSKFK EMMEMTTATD  300
SISSQPELDT PQCTFPDDIQ TYFDCQESSS YGEGDDLIFS ELNSFMPPMF QCDFTA*
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPrupe.1G101600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007226618.10.0AP2-like ethylene-responsive transcription factor At1g16060
SwissprotQ94AN41e-116AP2L1_ARATH; AP2-like ethylene-responsive transcription factor At1g16060
TrEMBLM5XNZ80.0M5XNZ8_PRUPE; Uncharacterized protein
STRINGEMJ278170.0(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF130034101
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G16060.11e-101ARIA-interacting double AP2 domain protein
Publications ? help Back to Top
  1. Todd J,Post-Beittenmiller D,Jaworski JG
    KCS1 encodes a fatty acid elongase 3-ketoacyl-CoA synthase affecting wax biosynthesis in Arabidopsis thaliana.
    Plant J., 1999. 17(2): p. 119-30
    [PMID:10074711]
  2. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]