PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Prupe.1G101600.1.p | ||||||||
Common Name | PRUPE_ppa023152mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
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Family | AP2 | ||||||||
Protein Properties | Length: 357aa MW: 40250.8 Da PI: 8.2649 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 49.5 | 1.1e-15 | 47 | 106 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.pseng...kr.krfslgkfgtaeeAakaaiaarkkleg 55 s y+GV++++++gr++A+++d ++n k+ ++++lg ++ +e Aa a++ a++k++g Prupe.1G101600.1.p 47 SIYRGVTRHRWTGRYEAHLWDkNCWNEsqnKKgRQVYLGAYDDEEAAAHAYDLAALKYWG 106 57*******************999955656446*************************98 PP | |||||||
2 | AP2 | 51.2 | 3e-16 | 149 | 200 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV +++ +grW+A+I + g +k+ +lg++ t eeAa a++ a+ +++g Prupe.1G101600.1.p 149 SKYRGVARHHHNGRWEARIGRvF---G-NKYLYLGTYATQEEAATAYDMAAIEYRG 200 89****99**********99966...3.6*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 8.7E-12 | 47 | 106 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 6.68E-11 | 47 | 116 | No hit | No description |
SuperFamily | SSF54171 | 3.27E-17 | 47 | 116 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 20.31 | 48 | 114 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.4E-16 | 48 | 115 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 2.8E-27 | 48 | 120 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.0E-6 | 49 | 60 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 5.6E-12 | 149 | 200 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.05E-17 | 149 | 210 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 4.43E-24 | 149 | 210 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 1.1E-17 | 150 | 209 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.2E-24 | 150 | 214 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 18.334 | 150 | 208 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.0E-6 | 190 | 210 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 357 aa Download sequence Send to blast |
MAKLSNQKTT AKNNIISNAN AANNTTVTKV KRTRRSVPRD SPPQRSSIYR GVTRHRWTGR 60 YEAHLWDKNC WNESQNKKGR QVYLGAYDDE EAAAHAYDLA ALKYWGQDTI LNFPLSTYPK 120 ELKEMEGQSR EEYIGSLRRK SSGFSRGVSK YRGVARHHHN GRWEARIGRV FGNKYLYLGT 180 YATQEEAATA YDMAAIEYRG LNAVTNFDLS RYIKWLKPNG PNNDISGQTK PNVEAILPNV 240 TQNPNDQERG LGFFNNLAYS PGETVVTTQL PRPTTATSAL GLLLQSSKFK EMMEMTTATD 300 SISSQPELDT PQCTFPDDIQ TYFDCQESSS YGEGDDLIFS ELNSFMPPMF QCDFTA* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Prupe.1G101600.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007226618.1 | 0.0 | AP2-like ethylene-responsive transcription factor At1g16060 | ||||
Swissprot | Q94AN4 | 1e-116 | AP2L1_ARATH; AP2-like ethylene-responsive transcription factor At1g16060 | ||||
TrEMBL | M5XNZ8 | 0.0 | M5XNZ8_PRUPE; Uncharacterized protein | ||||
STRING | EMJ27817 | 0.0 | (Prunus persica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1300 | 34 | 101 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G16060.1 | 1e-101 | ARIA-interacting double AP2 domain protein |
Link Out ? help Back to Top | |
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Phytozome | Prupe.1G101600.1.p |
Entrez Gene | 18792076 |
Publications ? help Back to Top | |||
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