PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.1G093900.1.p
Common NamePRUPE_ppa007083mg
Organism
Prunus persica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family CO-like
Protein Properties Length: 384aa    MW: 41693.8 Da    PI: 6.3085
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.1G093900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box23.98.5e-081858438
            zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg......Ht 38
                        + C+ +++  + lfC+ ++ +lC +C  ++H        H+
  Prupe.1G093900.1.p 18 KPCDSCKNSAAVLFCRADSAFLCLTCDAKIHAAnklatrHE 58
                        57******99*********************6556666666 PP
2zf-B_box27.27.8e-0960105342
            zf-B_box   3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42 
                          ++C+ +e+ +++  C+ +   lC +C   +H+       H++vp+
  Prupe.1G093900.1.p  60 VWMCEVCEQAPASVTCKADAAALCVTCDADIHSAnplsrrHDRVPV 105
                         689*****************************66899999999986 PP
3CCT691.2e-23311354144
                 CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                         Rea++lRY+eKrk+RkF+K+irY+sRKa+Ae+RpR+KGrF+k++
  Prupe.1G093900.1.p 311 REARVLRYREKRKNRKFQKTIRYASRKAYAETRPRIKGRFAKRT 354
                         9*****************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003362.8E-131562IPR000315B-box-type zinc finger
PfamPF006432.9E-61859IPR000315B-box-type zinc finger
CDDcd000214.87E-91962No hitNo description
PROSITE profilePS5011910.3952062IPR000315B-box-type zinc finger
PROSITE profilePS5011910.82258105IPR000315B-box-type zinc finger
PfamPF006438.9E-760105IPR000315B-box-type zinc finger
CDDcd000211.69E-961105No hitNo description
SMARTSM003361.0E-963105IPR000315B-box-type zinc finger
PfamPF062038.5E-18311353IPR010402CCT domain
PROSITE profilePS5101716.668311353IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 384 aa     Download sequence    Send to blast
MGIQAGGWRT MAGGLVAKPC DSCKNSAAVL FCRADSAFLC LTCDAKIHAA NKLATRHERV  60
WMCEVCEQAP ASVTCKADAA ALCVTCDADI HSANPLSRRH DRVPVEPFFD SAESIIVKSA  120
AASSSVDSLN FLLPNGAVPS HTKDDENDAA STWLIPNLNF NSKLQMDIAP DIIKSSELFF  180
PEMDSLLEFD YPNPIHHDIS GSGTDSVVPV QPDPLPPPSL NINRVSAEQN CFDLEFCRSK  240
LSSSFSYPTQ SLSQSVSSSS VEVGVVPDGN SMSDISYPFG RNANHNVSDP SAQVSATTAN  300
QVATQLSGLD REARVLRYRE KRKNRKFQKT IRYASRKAYA ETRPRIKGRF AKRTETEIEA  360
VDNIYGSAQG AFIPETYGVV PTF*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPrupe.1G093900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007223099.10.0zinc finger protein CONSTANS-LIKE 5
SwissprotQ9FHH81e-119COL5_ARATH; Zinc finger protein CONSTANS-LIKE 5
TrEMBLM5XRX00.0M5XRX0_PRUPE; Uncharacterized protein
STRINGEMJ242980.0(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13023493
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57660.11e-101CONSTANS-like 5
Publications ? help Back to Top
  1. Vercruyssen L, et al.
    ANGUSTIFOLIA3 binds to SWI/SNF chromatin remodeling complexes to regulate transcription during Arabidopsis leaf development.
    Plant Cell, 2014. 26(1): p. 210-29
    [PMID:24443518]