PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Prupe.1G088700.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
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Family | NAC | ||||||||
Protein Properties | Length: 322aa MW: 36564.2 Da PI: 6.3738 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 132.8 | 2.5e-41 | 42 | 167 | 2 | 128 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvka.eekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 ppG+rF+P d elv yL+kk+++++l+ + i++v++y+++P +L + +++ +e+e+yfF++rdkky++g r+nra+ +gyWkatg +k Prupe.1G088700.1.p 42 PPGYRFKPLDGELVAIYLRKKIANEPLPP-NKIHDVELYRFNPDTLSEIYESyGEDEMYFFTSRDKKYPNGARPNRAAGDGYWKATGVKKI 131 9*************************999.77**************8544443778********************************887 PP NAM 92 vlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 v+ ++ +vg k++Lvfy+g+ p+g ktdW mhe+++ Prupe.1G088700.1.p 132 VKF-EDVEVGSKTSLVFYRGKPPHGDKTDWKMHEFQV 167 777.9999***************************86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 2.88E-49 | 37 | 192 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 47.378 | 41 | 192 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.8E-20 | 42 | 166 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 322 aa Download sequence Send to blast |
MEKQSISSKA SIVTKNGSDL HGGHTGSYDS YYDDASYFDS IPPGYRFKPL DGELVAIYLR 60 KKIANEPLPP NKIHDVELYR FNPDTLSEIY ESYGEDEMYF FTSRDKKYPN GARPNRAAGD 120 GYWKATGVKK IVKFEDVEVG SKTSLVFYRG KPPHGDKTDW KMHEFQVNAP PKRKDRNDMR 180 LDDCVLCRIY NKHNHSKDSN QSNNNGVEIQ EQHNVGSNSQ DNAHVSGEVV DHPPANSHEL 240 TSLLSNQKCY YNTDQSENLN SANCIGFDGP FGVVSISSAL PFQNPQQFNG YQKRQRFCDL 300 PSEFYTNYDQ WLNDTAKDLT H* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 5e-47 | 40 | 197 | 16 | 170 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 5e-47 | 40 | 197 | 16 | 170 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 5e-47 | 40 | 197 | 16 | 170 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 5e-47 | 40 | 197 | 16 | 170 | NO APICAL MERISTEM PROTEIN |
3swm_A | 6e-47 | 40 | 197 | 19 | 173 | NAC domain-containing protein 19 |
3swm_B | 6e-47 | 40 | 197 | 19 | 173 | NAC domain-containing protein 19 |
3swm_C | 6e-47 | 40 | 197 | 19 | 173 | NAC domain-containing protein 19 |
3swm_D | 6e-47 | 40 | 197 | 19 | 173 | NAC domain-containing protein 19 |
3swp_A | 6e-47 | 40 | 197 | 19 | 173 | NAC domain-containing protein 19 |
3swp_B | 6e-47 | 40 | 197 | 19 | 173 | NAC domain-containing protein 19 |
3swp_C | 6e-47 | 40 | 197 | 19 | 173 | NAC domain-containing protein 19 |
3swp_D | 6e-47 | 40 | 197 | 19 | 173 | NAC domain-containing protein 19 |
4dul_A | 5e-47 | 40 | 197 | 16 | 170 | NAC domain-containing protein 19 |
4dul_B | 5e-47 | 40 | 197 | 16 | 170 | NAC domain-containing protein 19 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Prupe.1G088700.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020420935.1 | 0.0 | NAC transcription factor 29 | ||||
TrEMBL | A0A251QUH2 | 0.0 | A0A251QUH2_PRUPE; Uncharacterized protein | ||||
STRING | XP_008223716.1 | 0.0 | (Prunus mume) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF10112 | 16 | 42 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G77450.1 | 2e-51 | NAC domain containing protein 32 |
Link Out ? help Back to Top | |
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Phytozome | Prupe.1G088700.1.p |