PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Prupe.1G084900.1.p | ||||||||
Common Name | PRUPE_ppa003839mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
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Family | AP2 | ||||||||
Protein Properties | Length: 549aa MW: 59733.2 Da PI: 8.5664 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 47.9 | 3.2e-15 | 174 | 233 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 s y+GV++++++gr++A+++d + g ++ ++++lg ++ +e+Aa+a++ a++k++g Prupe.1G084900.1.p 174 SIYRGVTRHRWTGRYEAHLWDnSCRrEGqsRKgRQVYLGGYDKEEKAARAYDLAALKYWG 233 57*******************666664477446*************************98 PP | |||||||
2 | AP2 | 47.1 | 5.8e-15 | 276 | 327 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s y+GV+++++ grW A+I + +k +lg+f t eeAa+a++ a+ k++g Prupe.1G084900.1.p 276 SIYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 327 57****************988532...5************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 1.93E-22 | 174 | 243 | No hit | No description |
SuperFamily | SSF54171 | 1.44E-17 | 174 | 243 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 3.2E-12 | 174 | 233 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 19.23 | 175 | 241 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 5.3E-16 | 175 | 242 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 3.5E-29 | 175 | 247 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 7.2E-6 | 176 | 187 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.31E-17 | 276 | 336 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 1.03E-24 | 276 | 335 | No hit | No description |
Pfam | PF00847 | 7.2E-10 | 276 | 327 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 19.045 | 277 | 335 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 5.7E-18 | 277 | 335 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 3.5E-33 | 277 | 341 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 7.2E-6 | 317 | 337 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009845 | Biological Process | seed germination | ||||
GO:0040019 | Biological Process | positive regulation of embryonic development | ||||
GO:0048364 | Biological Process | root development | ||||
GO:0060772 | Biological Process | leaf phyllotactic patterning | ||||
GO:0060774 | Biological Process | auxin mediated signaling pathway involved in phyllotactic patterning | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 549 aa Download sequence Send to blast |
MDSSPQNWLL GFSLSNHSHH RHPSHDLSLF EAFTSSPSQT SAHQQQDHSN PGGATPPSPT 60 DLSIFSSGVR GPKLEDFLGG STATPTSLAH FSGTSAAADH HHNHQQTAPL ALSENEIYDS 120 ELKTIAASFL RGFSSPATAA ASSVQTTKPQ NLVPLASSEL TPKKTADTFG QRTSIYRGVT 180 RHRWTGRYEA HLWDNSCRRE GQSRKGRQVY LGGYDKEEKA ARAYDLAALK YWGPTTTTNF 240 PVSNYERELN EMKNMTRQEF VASLRRKSSG FSRGASIYRG VTRHHQHGRW QARIGRVAGN 300 KDLYLGTFST QEEAAEAYDI AAIKFRGLNA VTNFDMGRYD VKSIANSNLP IGGMSGKSKN 360 SSDSDSKSIE GNRSADDRDL SSASSVTFAS QQPSSSTLSF AIPIKQDPST DYWSNIFGYH 420 HNAKNPSPVS VAPSSLFQSC TTNVPYGNNS SQIPFNMDFS VSATSSTSPS ETNNGYFGNY 480 NAHGQQQQQQ DQSTSGTNSI PFATPIALNS NNGFETSSGY GSWIGPSLHT FQTHAKTNLF 540 QTPIFGME* |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Present in inflorescence meristem and later in young floral mersitems. Expressed in sepal, petal, stamen and carpel primordia. In petal, progressively confined to petal margin and epidermal cells. Restricted to sporogenous tissue in the stamen and to the medial ridge of the carpel. Present in tissues that develop from this ridge, such as placenta and ovule primordia. In ovules, first expressed in distal part of the funiculus and the outer integument, before being confined to the funiculus. {ECO:0000269|PubMed:15988559}. | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in roots, seedlings, inflorescence, and siliques. Also detected at low levels in leaves. {ECO:0000269|PubMed:15988559}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Involved in the regulation of floral organs size. {ECO:0000250, ECO:0000269|PubMed:15988559}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Prupe.1G084900.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020411230.1 | 0.0 | AP2-like ethylene-responsive transcription factor AIL5 | ||||
Swissprot | Q6PQQ3 | 1e-155 | AIL5_ARATH; AP2-like ethylene-responsive transcription factor AIL5 | ||||
TrEMBL | A0A251QUH0 | 0.0 | A0A251QUH0_PRUPE; Uncharacterized protein | ||||
STRING | EMJ26826 | 0.0 | (Prunus persica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF12562 | 27 | 35 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G57390.1 | 1e-149 | AINTEGUMENTA-like 5 |
Link Out ? help Back to Top | |
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Phytozome | Prupe.1G084900.1.p |
Entrez Gene | 18791311 |
Publications ? help Back to Top | |||
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