PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Prupe.1G075500.1.p | ||||||||
Common Name | PRUPE_ppa023964mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
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Family | HB-PHD | ||||||||
Protein Properties | Length: 699aa MW: 78921.5 Da PI: 9.7864 | ||||||||
Description | HB-PHD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 34.3 | 3.9e-11 | 475 | 518 | 10 | 53 |
HHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHH CS Homeobox 10 eqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRa 53 + +e L ++F +n ps++ +e L+k+lgL+ ++V+ WF+N R+ Prupe.1G075500.1.p 475 KAVEKLRQAFSENELPSRDVKENLSKELGLDPEKVSKWFKNARY 518 67899*************************************97 PP | |||||||
2 | PHD | 40.3 | 7.2e-14 | 233 | 288 | 1 | 51 |
SBTTTSSTCT..TSSEEEBS.SSSSEEETTTSTSSSSHHSHHSS..TBSSHHHHTT CS PHD 1 rCkvCgksde..egelvlCd.gCkewfHlkClglkleseekpeg..ewlCeeCkek 51 +C+ C+ +++ +++++lCd +C+++fH+kCl+++l++e++p+g w+C+ C++k Prupe.1G075500.1.p 233 FCAKCKLNEAfpDNDIILCDgTCNSAFHQKCLDPPLDTENIPRGdqGWFCKFCECK 288 699999955455********56*********************999*******985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57903 | 9.52E-15 | 225 | 291 | IPR011011 | Zinc finger, FYVE/PHD-type |
Gene3D | G3DSA:3.30.40.10 | 2.5E-12 | 229 | 288 | IPR013083 | Zinc finger, RING/FYVE/PHD-type |
PROSITE profile | PS50016 | 10.389 | 231 | 288 | IPR019787 | Zinc finger, PHD-finger |
SMART | SM00249 | 5.8E-9 | 233 | 286 | IPR001965 | Zinc finger, PHD-type |
Pfam | PF00628 | 3.9E-11 | 233 | 288 | IPR019787 | Zinc finger, PHD-finger |
CDD | cd15504 | 6.84E-30 | 233 | 285 | No hit | No description |
PROSITE pattern | PS01359 | 0 | 234 | 285 | IPR019786 | Zinc finger, PHD-type, conserved site |
Gene3D | G3DSA:1.10.10.60 | 7.5E-13 | 458 | 517 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 12.6 | 463 | 523 | IPR001356 | Homeobox domain |
SMART | SM00389 | 2.5E-9 | 465 | 527 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 1.07E-10 | 466 | 532 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 1.05E-8 | 471 | 527 | No hit | No description |
Pfam | PF00046 | 1.5E-8 | 474 | 518 | IPR001356 | Homeobox domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009733 | Biological Process | response to auxin | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 699 aa Download sequence Send to blast |
MHGLGKKSSL KESGKPRYSN SVAKLISSPK FRKGGKVSHV KKIKPKSKTI IASCLSKKRG 60 ADSTRKGSRN NGTDKKLMSR KGVHKVHDTN SSKKLSSVKL QDEKFSFKDS DKKGENADGE 120 VKLRIKRRRK KKLQKDKVEL DETSRLQRRT RYLLIKIKLE QNLIDAYSGE GWKGQSREKI 180 KPEKELQRAK KQILKCKLGI RDAIHQLYSL SSVGSMADSV IAADGSVYHE HIFCAKCKLN 240 EAFPDNDIIL CDGTCNSAFH QKCLDPPLDT ENIPRGDQGW FCKFCECKME ILEVVNAHLG 300 TCFSNDCGWQ DVFKEEAAFP DGENSLLNPD EEWPSDDSED DDYNPERNEN SCSFSMGGTD 360 DNASDDELST DVSVGSDEST DGEVVSGRRQ RRRVDYKKLY DEMFGKDGPL HEQISDDEDW 420 GPVKRKRREK ESDAASTLMT LYESERIPDV TPTEVKNKHP PDTQVRRACF RIPRKAVEKL 480 RQAFSENELP SRDVKENLSK ELGLDPEKVS KWFKNARYLA LKTRKEESAT NLHTVTTGIS 540 KESTNENVTE KAADLMASDS DDFLAETVVH SPRNVKKSFR RKHPKSLSSP LRKNQQKGSS 600 CGSPAKRNKD GMELSDNVSL KKLLKARTKE KKANLIAEGG CRVAELEMER LCKAKGRLEN 660 MRQKLLKFQN AKAKKSNKSL LHEQSVIYVP IAELKDKV* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 125 | 131 | KRRRKKK |
2 | 127 | 132 | RRKKKL |
3 | 387 | 392 | RRQRRR |
4 | 424 | 429 | RKRREK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Specifically binds to the fungal elicitor-responsive DNA element, 5'-CTAATTGTTTA-3', of the gene PR2 promoter. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Prupe.1G075500.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By pathogen infection. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007224523.1 | 0.0 | pathogenesis-related homeodomain protein isoform X1 | ||||
Swissprot | P48785 | 1e-154 | PRH_ARATH; Pathogenesis-related homeodomain protein | ||||
TrEMBL | M5XHZ3 | 0.0 | M5XHZ3_PRUPE; Uncharacterized protein | ||||
STRING | EMJ25722 | 0.0 | (Prunus persica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF5275 | 33 | 49 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G29940.2 | 1e-155 | pathogenesis related homeodomain protein A |
Link Out ? help Back to Top | |
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Phytozome | Prupe.1G075500.1.p |
Entrez Gene | 18792243 |
Publications ? help Back to Top | |||
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