PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Prupe.1G070500.3.p

Organism

Prunus persica

Taxonomic ID

3760

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus

Family

TCP

Protein Properties

Length: 282aa MW: 29568.6 Da PI: 9.8095

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Prupe.1G070500.3.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	118.1	1.1e-36	37	152	3	89
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssasnsssg..... 88 +kk +++++h+kv+gR+RR+R+++ caar+F+L++eLG+++d++tieWLl+qa+p+i+++tgt++++as++ ++s s ++++ss+ Prupe.1G070500.3.p 37 VKKPPSKDRHSKVDGRGRRIRMPIICAARVFQLTRELGHKSDGQTIEWLLRQAEPSIIAATGTGTTPASFS-TVSVSLRGGAPSSApsstt 126 79*************************************************************99999666.4444444444444434444 PP TCP 89 .........................k 89 + Prupe.1G070500.3.p 127 tsdhkphllggptpfilgkrvrgahD 152 44455566666666666544444431 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	1.7E-33	42	162	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	28.209	42	96	IPR017887	Transcription factor TCP subgroup

Sequence ? help Back to Top
Protein Sequence Length: 282 aa Download sequence Send to blast
MSNSEAPNNE LTNGGGGGGM VEQQASQRPS SNGVLSVKKP PSKDRHSKVD GRGRRIRMPI 60 ICAARVFQLT RELGHKSDGQ TIEWLLRQAE PSIIAATGTG TTPASFSTVS VSLRGGAPSS 120 APSSTTTSDH KPHLLGGPTP FILGKRVRGA HDDDNGNHNH SHDAKDPSDH ANDGAVSVVG 180 HSMASMLGPT AGGPGGFWAP HFGQVWSFAA TPPPEMMAQS AVSHQQHQQH QQQQHSLFLQ 240 QQPMGEASAA RVGNYLPGHL NLLASLSGGH GNSGRREDNP R*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Ppe.118	0.0	fruit

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00524	DAP	Transfer from AT5G23280	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Prupe.1G070500.3.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK240798	6e-75	AK240798.1 Oryza sativa Japonica Group cDNA, clone: J065002G04, full insert sequence.
GenBank	AP004776	6e-75	AP004776.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, PAC clone:P0452F04.
GenBank	AP014958	6e-75	AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence.
GenBank	CP012610	6e-75	CP012610.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 2 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020410109.1	0.0	transcription factor TCP7-like
Refseq	XP_020410110.1	0.0	transcription factor TCP7-like
Swissprot	Q9FMX2	1e-90	TCP7_ARATH; Transcription factor TCP7
TrEMBL	A0A251QTQ6	0.0	A0A251QTQ6_PRUPE; Uncharacterized protein
STRING	XP_008365949.1	1e-155	(Malus domestica)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G23280.1	5e-70	TCP family protein

Link Out ? help Back to Top
Phytozome	Prupe.1G070500.3.p