PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.1G019100.2.p
Organism
Prunus persica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family CPP
Protein Properties Length: 794aa    MW: 87017.2 Da    PI: 6.1335
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.1G019100.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR49.87e-16496534240
                 TCR   2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 
                         ++k+CnCkkskClk+YCeCfaag++C e C+C++C+Nk 
  Prupe.1G019100.2.p 496 SCKRCNCKKSKCLKLYCECFAAGVYCIEPCSCQECFNKP 534
                         689**********************************96 PP
2TCR50.54.1e-16581619139
                 TCR   1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNk 39 
                         ++k+gCnCkks+ClkkYCeC++ g+ Cs +C+Ce+CkN 
  Prupe.1G019100.2.p 581 RHKRGCNCKKSSCLKKYCECYQGGVGCSISCRCEGCKNA 619
                         589***********************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011142.5E-17495536IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163437.23496621IPR005172CRC domain
PfamPF036381.6E-11498533IPR005172CRC domain
SMARTSM011144.4E-17581622IPR033467Tesmin/TSO1-like CXC domain
PfamPF036381.3E-11583619IPR005172CRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009934Biological Processregulation of meristem structural organization
GO:0048444Biological Processfloral organ morphogenesis
GO:0051302Biological Processregulation of cell division
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 794 aa     Download sequence    Send to blast
MDTPERNQIG TPKAKFEDSP VFNYINSLSP IKPVKSVHIT QTFSSLSFAS LPSVFTSPHV  60
SAHKESRFLR RHNISDPSKP ESSLESGNKV SANEDAAQLY INSEELREDC VQGVSTGEDS  120
VEPSSEHSKF VIELPRNLKY DCGSPDCHPT TRCGTEAHCE LEVADLSAPL VPYVQKTSEE  180
GSSSDEAHLQ IICQTVQRKE GTGCDWESLI CDAADLLIFD SPNGTEAFKG LMQNSLDPVT  240
RFCTSLAPQL TQNDVNDEQN VQVLDMVGSG GQLETEDPAS QYGEASKLER TEQMEGHLNN  300
CMVSSQSEKE DNKVETPLQF NCKPAVLNLQ RGLRRRCLDF EMAGARRKSL DNVSNSSSNM  360
LSQSDEKIAT NDKQLVPMKP GGESSRCILP GIGLHLNALA KTSKDYKIIK CESLAYGRQL  420
SLPNSTADIH SPTGQGPGHE SFSSASSERD MDGTENGVQL AHDASQEPAF LANEEFNQNS  480
PKKKRRRFEH AGETESCKRC NCKKSKCLKL YCECFAAGVY CIEPCSCQEC FNKPIHEDTV  540
LATRKQIESR NPLAFAPKVI RSSDSVPELG EESSKTPASA RHKRGCNCKK SSCLKKYCEC  600
YQGGVGCSIS CRCEGCKNAF GRKDGSFIGT EAELDEEEAE ACEKSVAEKH QQKIEIQKNE  660
EQRLDSALPT TPLRLSRQMV SLPFSSKNKP PRSSVFSIGG SSSGLYTSQK LGQPNILRPE  720
SKFERHSQSV PEDEMPEILQ GDVSPSTGVK TASPNSKRVC PPNTDFGPSP GRRTGRKLIL  780
QSIPSFPSLT PQH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A4e-1749861812120Protein lin-54 homolog
5fd3_B4e-1749861812120Protein lin-54 homolog
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1481486KKKRRR
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00624PBMTransfer from PK22848.1Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPrupe.1G019100.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020410866.10.0CRC domain-containing protein TSO1 isoform X2
TrEMBLA0A251QRB30.0A0A251QRB3_PRUPE; Uncharacterized protein
STRINGXP_008224266.10.0(Prunus mume)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G14770.11e-144TESMIN/TSO1-like CXC 2