PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Prupe.1G008400.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
|
||||||||
Family | ERF | ||||||||
Protein Properties | Length: 410aa MW: 45352.9 Da PI: 8.2665 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 63.1 | 5.9e-20 | 220 | 269 | 3 | 56 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 ++GVr+++ +g+WvAeIr p++ r+r++lg+f+taeeAa a++ a+ l+ge Prupe.1G008400.1.p 220 FRGVRQRH-WGKWVAEIRLPRN---RARVWLGTFDTAEEAAMAYDTAAYMLRGE 269 8******9.**********955...5*************************997 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 2.11E-32 | 218 | 278 | No hit | No description |
SMART | SM00380 | 2.5E-36 | 219 | 282 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 22.879 | 219 | 276 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.05E-22 | 219 | 277 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 7.8E-32 | 219 | 277 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 9.7E-11 | 220 | 231 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 7.4E-14 | 220 | 269 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 9.7E-11 | 242 | 258 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 410 aa Download sequence Send to blast |
MDGKFPKLET FVAKQLPSYF SRMASDNGSN LIGDPAIWCG SVSKSSLSPE SSSSSTEEFS 60 SSGSNLIDNM PGLTKSPFVP VNFLDTFPQL SRVQEPNLLD PSSLSSSSSS TQVEVVDSLG 120 KTKGCDEPSM FPYLSIPSFP TPQVIDQIQR QPGMIEWLKL NQNLASHSSK GFNDYWLSTT 180 KTQPMKHTGR SSRLQQQINQ HRKQPHNNLS SAASTPGKLF RGVRQRHWGK WVAEIRLPRN 240 RARVWLGTFD TAEEAAMAYD TAAYMLRGEH AHLNFPDLKH QLKANALKGT TAALLEAKLQ 300 AITSSQAHQK AIMESKSSQL ASPNKHSADD HDDHKYSNLM INSNFSQNPT RKEWQFGLES 360 KVGSDHQVVI ESKKSKQDLV SADVDAVQLS RMPSLDMDMI WDALLVSDS* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 3e-21 | 217 | 276 | 3 | 63 | ATERF1 |
3gcc_A | 3e-21 | 217 | 276 | 3 | 63 | ATERF1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Prupe.1G008400.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_020417842.1 | 0.0 | ethylene-responsive transcription factor ERF062 | ||||
TrEMBL | A0A251QQU9 | 0.0 | A0A251QQU9_PRUPE; Uncharacterized protein | ||||
STRING | XP_008224508.1 | 0.0 | (Prunus mume) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF10102 | 31 | 41 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G13620.1 | 1e-55 | ERF family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Prupe.1G008400.1.p |