PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.1G000600.2.p
Organism
Prunus persica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family C3H
Protein Properties Length: 376aa    MW: 40917.3 Da    PI: 8.2844
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.1G000600.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH38.22.4e-12427226
                        -S---SGGGGTS--TTTTT-SS-SS CS
             zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHg 26
                        k+e+C++f+r G C++GdrCkF H+
  Prupe.1G000600.2.p  4 KREPCKYFQR-GSCQFGDRCKFLHV 27
                        89********.*************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010317.638229IPR000571Zinc finger, CCCH-type
SMARTSM003562.9E-6228IPR000571Zinc finger, CCCH-type
SuperFamilySSF902298.37E-7326IPR000571Zinc finger, CCCH-type
PfamPF006425.8E-10427IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.0E-8427IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005635Cellular Componentnuclear envelope
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 376 aa     Download sequence    Send to blast
MPVKREPCKY FQRGSCQFGD RCKFLHVIQQ QQKSNIFGFG PQSGSNQQRK SNPYGFGVQN  60
NSQSKGPADF GSKQSQFKPF ENKWSRFSSQ TASAAPSSQK SDKQPQATNH RCTDPDSCRS  120
IIIEDNEHES PLWKLTCYGH WKNFPCDIVG DISYEELRAA AYDDAKHGLN MQSIIERERN  180
LLNTKLIEFD KLGKPQGALL KPNHSGQNPL PSASQNAFLQ AANNSAAPSL SSFTQLGTSL  240
NTGFGPRPSA PSNNGFAQLN PFANSTQTSS GFGTNNFLSG SAGFGNTGVM RHETNPFSTL  300
AVSSQIPSAT TGLPPILSDG PTSASNAVRQ STTEVQFLTN MQREKISGET SIWLKKTWSP  360
GEIPEDEPPD ALVEL*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ppe.21730.0fruit
Cis-element ? help Back to Top
SourceLink
PlantRegMapPrupe.1G000600.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020418067.10.0zinc finger CCCH domain-containing protein 16 isoform X2
TrEMBLA0A251QQE00.0A0A251QQE0_PRUPE; Uncharacterized protein
STRINGXP_008224558.10.0(Prunus mume)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75340.24e-61C3H family protein