PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3s423_30V3.2.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family ERF
Protein Properties Length: 279aa    MW: 29862.4 Da    PI: 4.8626
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3s423_30V3.2.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP253.84.9e-1757105355
               AP2   3 ykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                       ykGVr +  +g+Wv eIrdp     + +r++lg+f tae+Aa+a++aa  +l+g
  Pp3s423_30V3.2.p  57 YKGVRMRV-WGKWVTEIRDPI----TkTRIWLGSFATAEMAARAYDAAVVCLKG 105
                       9****999.**********72....36*********************999988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103221.48356114IPR001471AP2/ERF domain
SMARTSM003805.5E-2956120IPR001471AP2/ERF domain
SuperFamilySSF541716.28E-1857115IPR016177DNA-binding domain
PfamPF008471.2E-957103IPR001471AP2/ERF domain
PRINTSPR003672.4E-95768IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.106.1E-2857115IPR001471AP2/ERF domain
CDDcd000182.68E-2757116No hitNo description
PRINTSPR003672.4E-97995IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 279 aa     Download sequence    Send to blast
MVEKRKLKAI QVRRGGYLLG SLKRFSPSSI AKTSASSSLH GHNCHHALPS LPNAAPYKGV  60
RMRVWGKWVT EIRDPITKTR IWLGSFATAE MAARAYDAAV VCLKGASAPE LNFPDAIPPF  120
LIPQSTSSPK EIQAVALAAA TGSIQPGAPA PIQAASGGAR QESEVDVVGS ASSKCMDVEH  180
AHGNDAEGEN HDMPDVKQRS SEADLEEWIK KEFGEMDPVE REPSEDLLQE LMKGGNDEDT  240
AGALGGYSGV EQASECVWPS SDEADESLVY DVKLWSFT*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ppa.193250.0gametophore
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024367995.10.0ethylene-responsive transcription factor ERF013-like
RefseqXP_024375196.10.0ethylene-responsive transcription factor ERF013-like
TrEMBLA0A2K1I9S40.0A0A2K1I9S4_PHYPA; Uncharacterized protein
STRINGPP1S259_96V6.10.0(Physcomitrella patens)
STRINGPP1S259_97V6.10.0(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G21910.15e-26ERF family protein