PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Pp3s423_10V3.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
|
||||||||
Family | ERF | ||||||||
Protein Properties | Length: 217aa MW: 23242.3 Da PI: 7.6381 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 54.3 | 3.2e-17 | 57 | 105 | 3 | 55 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 ykGVr + +g+Wv eIrdp + +r++lg+f tae+Aa+a++aa +l+g Pp3s423_10V3.1.p 57 YKGVRMRV-WGKWVTEIRDPI----TkTRIWLGSFATAEMAARAYDAAVVCLKG 105 9****999.**********72....36*********************999988 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51032 | 21.483 | 56 | 114 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 5.5E-29 | 56 | 120 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 3.99E-18 | 57 | 115 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 3.9E-28 | 57 | 115 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 7.9E-10 | 57 | 103 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 2.46E-27 | 57 | 116 | No hit | No description |
PRINTS | PR00367 | 1.6E-9 | 57 | 68 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.6E-9 | 79 | 95 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 217 aa Download sequence Send to blast |
MVEKRKLKAI QVRRGGYLLG SLKRFSPSSI AKTSASSSLH GHNCHHALPS LPNAAPYKGV 60 RMRVWGKWVT EIRDPITKTR IWLGSFATAE MAARAYDAAV VCLKGASAPE LNFPDAIPPF 120 LIPQSTSSPK EIQAVALAAA TGSIQPGAPA PIQAASGGAR QESEVDVVGS ASSKCMDVEH 180 AHGNDAEGEN HDMPDVKQRS SEADLEEWIK KEFGEMD |
Expression -- UniGene ? help Back to Top | ||||||
---|---|---|---|---|---|---|
UniGene ID | E-value | Expressed in | ||||
Ppa.19325 | 0.0 | gametophore |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_024367996.1 | 1e-160 | ethylene-responsive transcription factor ERF014-like | ||||
TrEMBL | A0A2K1I9R6 | 1e-159 | A0A2K1I9R6_PHYPA; Uncharacterized protein (Fragment) | ||||
STRING | PP1S259_96V6.1 | 1e-158 | (Physcomitrella patens) | ||||
STRING | PP1S259_97V6.1 | 1e-158 | (Physcomitrella patens) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G21910.1 | 1e-26 | ERF family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Pp3s423_10V3.1.p |