PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pp3c9_6780V3.1.p

Common Name

PHYPADRAFT_92125

Organism

Physcomitrella patens

Taxonomic ID

3218

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella

Family

TALE

Protein Properties

Length: 1063aa MW: 115624 Da PI: 6.3266

Description

TALE family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pp3c9_6780V3.1.p	genome	COSMOSS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	27.2	6.7e-09	682	719	19	54
HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 Fe ++yp+ ++ LAk++gLt +qV++WF N R + Pp3c9_6780V3.1.p 682 FEHflHPYPKDVDKMSLAKQTGLTRSQVSNWFINARVR 719 554458******************************88 PP
2	BELL	87.1	2e-28	548	618	2	72
BELL 2 rqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 r +l+ kk kL +l+eV+ rY++y+e lq vi F+ ag +a+pYt lAl+a+SrhFrcLkdai +q+ Pp3c9_6780V3.1.p 548 RVDLELKKQKLNLMLDEVETRYRRYCEHLQLVITGFNSQAGPSTATPYTILALQAMSRHFRCLKDAIGSQL 618 67899**************************************************************9996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00574	1.4E-13	435	616	IPR006563	POX domain
Pfam	PF07526	2.2E-30	441	614	IPR006563	POX domain
PROSITE profile	PS50071	12.034	660	723	IPR001356	Homeobox domain
SMART	SM00389	3.8E-9	663	727	IPR001356	Homeobox domain
CDD	cd00086	3.02E-12	663	724	No hit	No description
SuperFamily	SSF46689	2.35E-16	664	730	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	1.3E-27	666	729	IPR009057	Homeodomain-like
Pfam	PF05920	1.6E-17	680	719	IPR008422	Homeobox KN domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Plant Ontology ? help Back to Top
PO Term	PO Category	PO Description
PO:0030018	anatomy	gametophore

Sequence ? help Back to Top
Protein Sequence Length: 1063 aa Download sequence Send to blast
MDPSEPLRAY GADSDKNLQT DSYNGSLMAS DSYNFLTGAG VLDVPLKEQN ESTHAHKSSK 60 EGAAQNSSGP SIETLYTNHE PSPSSGSFPG RSSPAPECNS WDNINGGGLY GNSNMQNILI 120 SGSGMMAAPT STTTAQLLIG GLHGGSFNDG SESDQGSIYY TSSNHHDDSM AQLYYVNAAA 180 GFSNPGFHSD GRQAGLVTTS LYPSQHGGTS AQQSSTDQSQ QQFGVPFISH ASLAHGSVRQ 240 RALESTGAVP ILSLHEHSGS HDGNHHYNWR NGGNEHPFLP MNAESNQNHQ SQFDTDLPQY 300 AMSRASHADL SHMQRTDHLQ SEISLHMDRS HGSSTTGQVL SLSLSSHQSQ FNSSGGQLSE 360 SEHMNAVAAQ AAAMAKTKEL ASRYLTGANA DLSRFRTPSR DDVVGIGARF LQKHNSGGGR 420 KHLESSNYSG PSGTAGSSNH ISASKFERSA QAILNEVCSV TPLKRPPKPI RSPDQQHWSV 480 AGGRSIGADA NLTYTGRDDR SAMLAGEVDS VRDPALFVTA SSLVTVSQLP LDSETVQELA 540 DAARCENRVD LELKKQKLNL MLDEVETRYR RYCEHLQLVI TGFNSQAGPS TATPYTILAL 600 QAMSRHFRCL KDAIGSQLKI VKRSFGEDER TGQGETSRIR YVDQQIRQQR TLQQLGMLQQ 660 HAWRPQRGLP ERAVSVLRAW LFEHFLHPYP KDVDKMSLAK QTGLTRSQVS NWFINARVRL 720 WKPMVEEMYV EEQKEYPGDH TAALAQSERM ARDQVDIESH TYEQYKGGRG HTGLLQEISA 780 GAQSSRLPNG LKRNEDREHD TGASVSEAGG ISSDTNAELY SQLIPRSHHL DIGAAGNYNQ 840 EGREAKKPRT SGSDAFNMTS STTLMHPGMD VEASESCART QNFSSGGELD LQRKSDVDFG 900 TQCQVLNQIN QDENGYTISQ QGTTIVDQIE PSVASGTFAA YNSNIGHRYG NEDYSSRTIS 960 AALTTSTGVS LTLGLCHCDT NQLRSSLVSP ILVKSTYNMD VNDQMNQLNG VEHFESRTKS 1020 VSNNCQSSAT MSNGHYNQIS AVQDDSDNST QQLSPHHEFV TS*

Sequence ? help Back to Top

Protein Sequence Length: 1063 aa Download sequence Send to blast

MDPSEPLRAY GADSDKNLQT DSYNGSLMAS DSYNFLTGAG VLDVPLKEQN ESTHAHKSSK  60
EGAAQNSSGP SIETLYTNHE PSPSSGSFPG RSSPAPECNS WDNINGGGLY GNSNMQNILI  120
SGSGMMAAPT STTTAQLLIG GLHGGSFNDG SESDQGSIYY TSSNHHDDSM AQLYYVNAAA  180
GFSNPGFHSD GRQAGLVTTS LYPSQHGGTS AQQSSTDQSQ QQFGVPFISH ASLAHGSVRQ  240
RALESTGAVP ILSLHEHSGS HDGNHHYNWR NGGNEHPFLP MNAESNQNHQ SQFDTDLPQY  300
AMSRASHADL SHMQRTDHLQ SEISLHMDRS HGSSTTGQVL SLSLSSHQSQ FNSSGGQLSE  360
SEHMNAVAAQ AAAMAKTKEL ASRYLTGANA DLSRFRTPSR DDVVGIGARF LQKHNSGGGR  420
KHLESSNYSG PSGTAGSSNH ISASKFERSA QAILNEVCSV TPLKRPPKPI RSPDQQHWSV  480
AGGRSIGADA NLTYTGRDDR SAMLAGEVDS VRDPALFVTA SSLVTVSQLP LDSETVQELA  540
DAARCENRVD LELKKQKLNL MLDEVETRYR RYCEHLQLVI TGFNSQAGPS TATPYTILAL  600
QAMSRHFRCL KDAIGSQLKI VKRSFGEDER TGQGETSRIR YVDQQIRQQR TLQQLGMLQQ  660
HAWRPQRGLP ERAVSVLRAW LFEHFLHPYP KDVDKMSLAK QTGLTRSQVS NWFINARVRL  720
WKPMVEEMYV EEQKEYPGDH TAALAQSERM ARDQVDIESH TYEQYKGGRG HTGLLQEISA  780
GAQSSRLPNG LKRNEDREHD TGASVSEAGG ISSDTNAELY SQLIPRSHHL DIGAAGNYNQ  840
EGREAKKPRT SGSDAFNMTS STTLMHPGMD VEASESCART QNFSSGGELD LQRKSDVDFG  900
TQCQVLNQIN QDENGYTISQ QGTTIVDQIE PSVASGTFAA YNSNIGHRYG NEDYSSRTIS  960
AALTTSTGVS LTLGLCHCDT NQLRSSLVSP ILVKSTYNMD VNDQMNQLNG VEHFESRTKS  1020
VSNNCQSSAT MSNGHYNQIS AVQDDSDNST QQLSPHHEFV TS*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4xrs_A	1e-16	669	726	1	58	Homeobox protein Meis1
4xrs_B	1e-16	669	726	1	58	Homeobox protein Meis1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024384244.1	0.0	BEL1-like homeodomain protein 2
Refseq	XP_024384245.1	0.0	BEL1-like homeodomain protein 2
TrEMBL	A0A2K1K2B6	0.0	A0A2K1K2B6_PHYPA; Uncharacterized protein
STRING	PP1S220_67V6.1	0.0	(Physcomitrella patens)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP133	16	172

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G16400.1	2e-67	BEL1-like homeodomain 7

Link Out ? help Back to Top
Phytozome	Pp3c9_6780V3.1.p
Entrez Gene	5940587

Publications ? help Back to Top
Rensing SA, et al. The Physcomitrella genome reveals evolutionary insights into the conquest of land by plants. Science, 2008. 319(5859): p. 64-9 [PMID:18079367]