PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c9_6350V3.1.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family bZIP
Protein Properties Length: 463aa    MW: 50344.1 Da    PI: 4.8839
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c9_6350V3.1.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_148.42.1e-15283335355
                       XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
            bZIP_1   3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkke 55 
                       ++kr +r+ +NRe+ArrsR+RK+a + eLe+ v++L aeN +  k++ e++ +
  Pp3c9_6350V3.1.p 283 DIKRVKRMLSNRESARRSRRRKQAHLTELETQVAQLRAENNTILKRVTEITIK 335
                       58****************************************99999887755 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1709.3E-12279333No hitNo description
SMARTSM003386.7E-19281345IPR004827Basic-leucine zipper domain
PROSITE profilePS5021711.208283333IPR004827Basic-leucine zipper domain
PfamPF001702.7E-13284334IPR004827Basic-leucine zipper domain
SuperFamilySSF579596.05E-11285332No hitNo description
PROSITE patternPS000360288303IPR004827Basic-leucine zipper domain
PfamPF124987.7E-9389439IPR020983Basic leucine-zipper, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0071215Biological Processcellular response to abscisic acid stimulus
GO:0071333Biological Processcellular response to glucose stimulus
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042802Molecular Functionidentical protein binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 463 aa     Download sequence    Send to blast
MQRNFSVDDI LGTFWKLDTQ GDAKGPIVSI PEDVEDDEDT HIPVVGSLRT KEDRGMNRSA  60
SEYAFQEFLR VSEAGGGFAR SKSRFNNEDI RDNNDDEDDT DPPSSPSPAS PASPKTSENR  120
TEVSKEELDC SSEADKVPRM LPTLPPKLEV PTMSGIVDHV EDALNPLFSG IRHEVESAAT  180
VTNSPQEYEF FLKHKLDLAC AAVALSRSAA GGAKVGPLAP QSSISPGAYG VMGSGDPIGI  240
PALPPKPEYG AMVPPTRTRA VTSGSDVSED DESEQGQNVP PGDIKRVKRM LSNRESARRS  300
RRRKQAHLTE LETQVAQLRA ENNTILKRVT EITIKFQEAA LENRVLKTDV ATLQAKLKMA  360
ESMVSGTTNG QVASMDLPLS ASRYLTYSSG GNGTQYMQQA PVLQQEQQQG FTGIKMGRTP  420
SMQRVASLEH LQKRIRGGPG CNNPVWGVSL DDEHSMLEQH ED*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1297304RRSRRRKQ
2299304SRRRKQ
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ppa.174650.0protonema
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00040PBMTransfer from AT5G28770Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024385345.10.0basic leucine zipper 63-like
TrEMBLA0A2K1K2960.0A0A2K1K296_PHYPA; Uncharacterized protein
STRINGPP1S220_101V6.10.0(Physcomitrella patens)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP18391639
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G28770.13e-33bZIP family protein