PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c9_470V3.1.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family bHLH
Protein Properties Length: 756aa    MW: 81727.2 Da    PI: 7.0075
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c9_470V3.1.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH491.1e-15328377255
                      HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      r +h++ E+rRR++iN++f+ Lr l+P++    ++K +Ka+ L +++eY++ Lq
  Pp3c9_470V3.1.p 328 RSKHSATEQRRRSKINDRFQMLRNLVPHS----DQKRDKASFLLEVIEYVQVLQ 377
                      889*************************9....9*****************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474592.36E-17325388IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.056326376IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.1E-22326392IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.1E-13328377IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.40E-14328381No hitNo description
SMARTSM003533.8E-12332382IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 756 aa     Download sequence    Send to blast
MAFVSTAGQK QLGPERGTGS PSSLRCNRYR ETAPGDFAAQ QQRQFHAVQN RHSMAHQQDE  60
RSQLHHFTLN EDTKPSTHDF LSVYDKGSQL AEHHLSSGLS SLLTTHDFLQ PLERSGGRSA  120
SGDARALREH QARAETTTSR NSTPASAERN FTTASPNYPN IQVPYVMAPN SAIRMVDEAE  180
VMRQARGYPT ASFSSRDGQS GGPESFRGVE VAADPETANA RENHAYWSGV RLKFRMPSDL  240
GFPAGSSAVK SAVVNGHQSI SAMTKQWTQG TIEVPKRPAR SQSEEDEDDE EELSEWPKGN  300
RKETISYKGD PVQRMEAKNG EIRGSTPRSK HSATEQRRRS KINDRFQMLR NLVPHSDQKR  360
DKASFLLEVI EYVQVLQEKV QKYETAEQGR HQERLKSMVW DLCKRGAAGS ADEASHINAL  420
VFGKSFSSGV GPLDINPVTE ADGGVRAKHP SEQAAPTCEV YSTSGPGIHQ ISNQPACSIH  480
SCISSFDGEK EHATALTAQP FAVGVPLQQA LPLPYALPII PSRLQSDLDG GRSILGSNSP  540
AKEKMSDLDP VSSRENECAH ATTPDHQFEV RPRISPPSQA DQISGQQSKA EHQIAAGTVV  600
GMIDGAQAGQ PSNASASRQP QESAQCKDKA VKPSRHSPEH RSDQTTPEDG SAASPGPVQP  660
PRIQGGVINV SSVYSQGLLD TLTRALQSSG IDLSQANISV QIDLGVNARA AAADTSAKVA  720
TTPESSDQSQ GRTRPAPVAA EHEPAMKRPK VEKDV*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ppa.139240.0protonema
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ1598691e-56DQ159869.1 Physcomitrella patens monodehydroascorbate reductase I (Mdhar1) gene, promoter region and complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024385326.10.0transcription factor BIM1-like
TrEMBLA0A2K1K1E20.0A0A2K1K1E2_PHYPA; Uncharacterized protein
STRINGPP1S90_29V6.10.0(Physcomitrella patens)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP13601747
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G08130.33e-31bHLH family protein