PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pp3c9_3340V3.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
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Family | GRAS | ||||||||
Protein Properties | Length: 764aa MW: 85050.5 Da PI: 5.5588 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 335.3 | 1.1e-102 | 386 | 754 | 2 | 374 |
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfs 94 ++lL +cA avs+g++ a +La+l+ l+sp+gd mqR+a+yf+eAL a+l++++++ly ++ ++ s ++ l+a++ +++++P++k+s Pp3c9_3340V3.2.p 386 TDLLHRCAFAVSQGKTGSAADYLAELRSLSSPYGDYMQRMAHYFMEALVAKLSGTGEQLYTVITNNHPS---AATMLKAYRQYVDCCPYIKLS 475 5799********************************************************999888887...899****************** PP GRAS 95 hltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakr 185 h+ ++ l+a+eg++rvH++ ++i++G+ Wp+L+q L++Rpegpp +RiTgv+ p +g ++++tg+rLa+fA+ +vpfef++ +a + Pp3c9_3340V3.2.p 476 HFFETKMTLDAFEGATRVHVVHYGIQYGVEWPSLIQHLSKRPEGPPYFRITGVDVPYPGddPCWKIHQTGRRLAEFAKMWNVPFEFHA-LAGK 567 *******************************************************9999777889***********************.599* PP GRAS 186 ledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpre 278 +e+++ ++++++++E+laV ++ ++h++ldesv +s+r+ +L+ ++sl+Pk++ ++ +a +n++ F++rf e++++ysa+f+ +e ++p++ Pp3c9_3340V3.2.p 568 WESFTAKDFNLRSDEVLAVTSH-KMHNILDESVLGSSPRELLLRRIRSLNPKLFFIIVDNAACNGPFFMTRFRESVKHYSAIFNGMELSFPED 659 *******************975.6********************************************************************* PP GRAS 279 seerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvS 371 + +r+++Ere++grei n+vaceg++r+ r+e +++W++rl++aGFk+v+ ++ + +++k++++++++d y v ++g+++lg k++ + + S Pp3c9_3340V3.2.p 660 DPDRVVLEREIFGREILNIVACEGQARVDRQEPYRQWQNRLQRAGFKQVQPKKIILSKMKAMMATFHKD-YGVGIDEGWFLLGIKNQIVKANS 751 *******************************************************************77.*********************** PP GRAS 372 aWr 374 +W+ Pp3c9_3340V3.2.p 752 CWE 754 **5 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 56.815 | 359 | 735 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 3.9E-100 | 386 | 754 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 764 aa Download sequence Send to blast |
MTEKATSDSS NPVRRGSGGS SLESLLQQAC LQLQKPKLQR RSESDPRLDV SVEKRVNLDS 60 ACLGDAADGL GETYFHKIRP EANSNFLERT APPKLETISK KTNVPRSNSG CVLGGRGSPL 120 GTSDNSSQFS PSPTRSLSND TQASVSGGNC DAVDFEGSSS VSADLAGQME SMIRYIDDIL 180 MNENMEDEKS LMQQTGAIHA MAKDLAGLID PDSSVDETNN LEVVGGDYSN DWAKNEILSA 240 EETNAVENSS VYRDLRKEIA DLISSEANVL DAGGFGGDND QSNTSTTFLP TEDNTTLKLM 300 EGYTRMLSKH IADVSGASNS DNVDYRSFIT ESDDLVVHFD DRLKYYLDNL NKNPPPNSAL 360 DFKLLLRTPG ERSSSSSSRV VYSSITDLLH RCAFAVSQGK TGSAADYLAE LRSLSSPYGD 420 YMQRMAHYFM EALVAKLSGT GEQLYTVITN NHPSAATMLK AYRQYVDCCP YIKLSHFFET 480 KMTLDAFEGA TRVHVVHYGI QYGVEWPSLI QHLSKRPEGP PYFRITGVDV PYPGDDPCWK 540 IHQTGRRLAE FAKMWNVPFE FHALAGKWES FTAKDFNLRS DEVLAVTSHK MHNILDESVL 600 GSSPRELLLR RIRSLNPKLF FIIVDNAACN GPFFMTRFRE SVKHYSAIFN GMELSFPEDD 660 PDRVVLEREI FGREILNIVA CEGQARVDRQ EPYRQWQNRL QRAGFKQVQP KKIILSKMKA 720 MMATFHKDYG VGIDEGWFLL GIKNQIVKAN SCWESKPVLN FMS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3g_A | 6e-49 | 391 | 753 | 25 | 378 | Protein SCARECROW |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Ppa.17430 | 0.0 | protonema |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024384043.1 | 0.0 | scarecrow-like protein 34 | ||||
TrEMBL | A0A2K1K1U0 | 0.0 | A0A2K1K1U0_PHYPA; Uncharacterized protein | ||||
STRING | PP1S213_67V6.1 | 0.0 | (Physcomitrella patens) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G07530.1 | 6e-99 | SCARECROW-like 14 |
Link Out ? help Back to Top | |
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Phytozome | Pp3c9_3340V3.2.p |