PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c9_25570V3.3.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family AP2
Protein Properties Length: 842aa    MW: 91761 Da    PI: 7.551
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c9_25570V3.3.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP247.16e-15355414155
                AP2   1 sgykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                        s ++GV++++++gr++A+++d  +   g  ++ ++++lg ++ +e+Aa+a++ a++k++g
  Pp3c9_25570V3.3.p 355 SVFRGVTRHRWTGRYEAHLWDnTCRkEGqtRKgRQVYLGGYDKEEKAARAYDLAALKYWG 414
                        689******************544454478446*************************98 PP
2AP245.32.2e-14459508355
                AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                        y+GV+++++ grW A+I  +     +k  +lg++ t eeAa+a++ a+ k++g
  Pp3c9_25570V3.3.p 459 YRGVTRHHQHGRWQARIGRVAG---NKDLYLGTYSTQEEAAEAYDIAAIKFRG 508
                        9***************988532...5************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000183.31E-20355422No hitNo description
PfamPF008471.2E-11355414IPR001471AP2/ERF domain
SuperFamilySSF541712.81E-16355423IPR016177DNA-binding domain
PROSITE profilePS5103218.913356422IPR001471AP2/ERF domain
SMARTSM003808.7E-28356428IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.2E-15356422IPR001471AP2/ERF domain
PRINTSPR003672.1E-5357368IPR001471AP2/ERF domain
SuperFamilySSF541712.48E-17457518IPR016177DNA-binding domain
CDDcd000184.57E-23457518No hitNo description
SMARTSM003806.0E-32458522IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.2E-17458517IPR001471AP2/ERF domain
PROSITE profilePS5103219.111458516IPR001471AP2/ERF domain
PfamPF008471.6E-9459508IPR001471AP2/ERF domain
PRINTSPR003672.1E-5498518IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000723Biological Processtelomere maintenance
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007389Biological Processpattern specification process
GO:0010073Biological Processmeristem maintenance
GO:0010449Biological Processroot meristem growth
GO:0019827Biological Processstem cell population maintenance
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 842 aa     Download sequence    Send to blast
MSQIHSSNLG GFQNSVNDCY NSLRNNGDGR NKNSGHDMEM MGSEGSLSIM EALRMSPSTD  60
HWPQTRAMQL DGGIHQHALV TADQLLRSAG KRGVGDQQMT SSQSHYDMQN NAVETREDPK  120
LEDFLGGSSL GGQYSNRESQ QQQLDSMYYN VGAPGSTFTR DAQSRINVNL PYLSQPRSDT  180
LHDVPPSFQV SYGRAPDQSC LSNPHNYEHP NTRAQLEFQE GNLLPGTRLH PQNLLQATLD  240
QSATAELLSD CALQSPSGGS LNTGSEDYKL KMWLRHQAAV DKRKLDGLAS LQPLTLSMSS  300
GSHETNISNA VQTAGLFLTT DCTAVAEPRK RGAGRSGRKE PSPRKSIDTF GQRTSVFRGV  360
TRHRWTGRYE AHLWDNTCRK EGQTRKGRQV YLGGYDKEEK AARAYDLAAL KYWGPSTTIN  420
FPLGTYEKEL EEMKNMSRQE YVASLRRKSS GFSRGASMYR GVTRHHQHGR WQARIGRVAG  480
NKDLYLGTYS TQEEAAEAYD IAAIKFRGIN AVTNFDMSRY NAARIQQGSL NVNHGLGAMK  540
AAKETELSTT MISTPLQSRG QTQAAQMIRH SQIDEDQQMC THSTGTPGSQ MTSEVLSGQS  600
GMSKNPHEWQ MLYQQQARNS WGSCPQGDSQ QGWLGFGVDS MRAPSTQSKF PAPTNGTSLR  660
NLMGLEALPQ DRNAGAGESS CSANQALMGH GMQSSSSMIS SSGFQGGSSG VYQDGDGRAL  720
NSPPMSNSAY PQQQQQQQQQ GSLDRGAVDS PKNSVDESEE ASSKSSGYDP VLQGDLSRSG  780
ILYLSPGSGS QGKMANYVES SSLSPWIGSN STTVQGLTER SNLSMGGHMG SGPIFSHSWN  840
E*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ppa.176670.0protonema
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB6755900.0AB675590.1 Physcomitrella patens APB2 mRNA for AP2-like ethylene-responsive transcription factor, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024385131.10.0uncharacterized protein LOC112286936 isoform X1
TrEMBLA0A2K1K4K60.0A0A2K1K4K6_PHYPA; Uncharacterized protein
STRINGPP1S131_139V6.10.0(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72570.11e-112AP2 family protein