PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c9_25570V3.2.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family AP2
Protein Properties Length: 810aa    MW: 88344.6 Da    PI: 8.2133
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c9_25570V3.2.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP247.25.7e-15323382155
                AP2   1 sgykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                        s ++GV++++++gr++A+++d  +   g  ++ ++++lg ++ +e+Aa+a++ a++k++g
  Pp3c9_25570V3.2.p 323 SVFRGVTRHRWTGRYEAHLWDnTCRkEGqtRKgRQVYLGGYDKEEKAARAYDLAALKYWG 382
                        689******************544454478446*************************98 PP
2AP245.42.1e-14427476355
                AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                        y+GV+++++ grW A+I  +     +k  +lg++ t eeAa+a++ a+ k++g
  Pp3c9_25570V3.2.p 427 YRGVTRHHQHGRWQARIGRVAG---NKDLYLGTYSTQEEAAEAYDIAAIKFRG 476
                        9***************988532...5************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000186.27E-20323390No hitNo description
PfamPF008471.2E-11323382IPR001471AP2/ERF domain
SuperFamilySSF541712.68E-16323391IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.105.0E-15324390IPR001471AP2/ERF domain
SMARTSM003808.7E-28324396IPR001471AP2/ERF domain
PROSITE profilePS5103218.913324390IPR001471AP2/ERF domain
PRINTSPR003671.9E-5325336IPR001471AP2/ERF domain
CDDcd000189.38E-23425486No hitNo description
SuperFamilySSF541712.35E-17425486IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.2E-17426485IPR001471AP2/ERF domain
SMARTSM003806.0E-32426490IPR001471AP2/ERF domain
PROSITE profilePS5103219.111426484IPR001471AP2/ERF domain
PfamPF008471.6E-9427476IPR001471AP2/ERF domain
PRINTSPR003671.9E-5466486IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000723Biological Processtelomere maintenance
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007389Biological Processpattern specification process
GO:0010073Biological Processmeristem maintenance
GO:0010449Biological Processroot meristem growth
GO:0019827Biological Processstem cell population maintenance
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 810 aa     Download sequence    Send to blast
MAQMLTSAFA PIRLMIKRCD GPLGWTADHW PQTRAMQLDG GIHQHALVTA DQLLRSAGKR  60
GVGDQQMTSS QSHYDMQNNA VETREDPKLE DFLGGSSLGG QYSNRESQQQ QLDSMYYNVG  120
APGSTFTRDA QSRINVNLPY LSQPRSDTLH DVPPSFQVSY GRAPDQSCLS NPHNYEHPNT  180
RAQLEFQEGN LLPGTRLHPQ NLLQATLDQS ATAELLSDCA LQSPSGGSLN TGSEDYKLKM  240
WLRHQAAVDK RKLDGLASLQ PLTLSMSSGS HETNISNAVQ TAGLFLTTDC TAVAEPRKRG  300
AGRSGRKEPS PRKSIDTFGQ RTSVFRGVTR HRWTGRYEAH LWDNTCRKEG QTRKGRQVYL  360
GGYDKEEKAA RAYDLAALKY WGPSTTINFP LGTYEKELEE MKNMSRQEYV ASLRRKSSGF  420
SRGASMYRGV TRHHQHGRWQ ARIGRVAGNK DLYLGTYSTQ EEAAEAYDIA AIKFRGINAV  480
TNFDMSRYNA ARIQQGSLNV NHGLGAMKAA KETELSTTMI STPLQSRGQT QAAQMIRHSQ  540
IDEDQQMCTH STGTPGSQMT SEVLSGQSGM SKNPHEWQML YQQQARNSWG SCPQGDSQQG  600
WLGFGVDSMR APSTQSKFPA PTNGTSLRNL MGLEALPQDR NAGAGESSCS ANQALMGHGM  660
QSSSSMISSS GFQGGSSGVY QDGDGRALNS PPMSNSAYPQ QQQQQQQQGS LDRGAVDSPK  720
NSVDESEEAS SKSSGYDPVL QGDLSRSGIL YLSPGSGSQG KMANYVESSS LSPWIGSNST  780
TVQGLTERSN LSMGGHMGSG PIFSHSWNE*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ppa.176670.0protonema
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB6755900.0AB675590.1 Physcomitrella patens APB2 mRNA for AP2-like ethylene-responsive transcription factor, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024385131.10.0uncharacterized protein LOC112286936 isoform X1
TrEMBLA0A2K1K4K60.0A0A2K1K4K6_PHYPA; Uncharacterized protein
STRINGPP1S131_139V6.10.0(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72570.11e-112AP2 family protein