PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pp3c9_24170V3.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
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Family | MYB | ||||||||
Protein Properties | Length: 575aa MW: 62668.6 Da PI: 5.725 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 53.4 | 5.8e-17 | 16 | 63 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT Ed +l+ +v+++G g+W+++ ++ g+ R++k+c++rw ++l Pp3c9_24170V3.1.p 16 KGPWTSAEDSILISYVTKHGEGNWNSVQKHSGLFRCGKSCRLRWANHL 63 79******************************************9986 PP | |||||||
2 | Myb_DNA-binding | 49.5 | 1e-15 | 69 | 112 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +g++T+eE+ ++v+++++ G++ W++ a+ ++ gRt++++k++w++ Pp3c9_24170V3.1.p 69 KGAFTPEEERIIVELHAKIGNK-WARMAAQLP-GRTDNEIKNYWNT 112 799*******************.*********.***********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 14.829 | 11 | 63 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 3.22E-29 | 14 | 110 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 7.9E-14 | 15 | 65 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.8E-23 | 17 | 70 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.24E-10 | 18 | 63 | No hit | No description |
Pfam | PF13921 | 7.6E-15 | 19 | 77 | No hit | No description |
PROSITE profile | PS51294 | 25.05 | 64 | 118 | IPR017930 | Myb domain |
SMART | SM00717 | 3.2E-15 | 68 | 116 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.2E-25 | 71 | 118 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 8.49E-11 | 71 | 112 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009789 | Biological Process | positive regulation of abscisic acid-activated signaling pathway | ||||
GO:0043068 | Biological Process | positive regulation of programmed cell death | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0045926 | Biological Process | negative regulation of growth | ||||
GO:0048235 | Biological Process | pollen sperm cell differentiation | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 575 aa Download sequence Send to blast |
MDMSSDVGLD GGALKKGPWT SAEDSILISY VTKHGEGNWN SVQKHSGLFR CGKSCRLRWA 60 NHLRPNLKKG AFTPEEERII VELHAKIGNK WARMAAQLPG RTDNEIKNYW NTRIKRRMRA 120 GLPVYPADKS KSSPTQYYVE PSDGRSFISG KDADCDFTSS FAQPGDHLHN LHVSNPRDSR 180 LMRNCFSITS MSELAPSATT NQGTNHVLNK SMGNPFEQTE VFRNSQHGRS DVGNGCVSFA 240 QLADGGNLNF QPDFNSSSQA CDRGITTRVV LPGFGNESER NMMLYDRISA FGNLNFLYKP 300 PVSNASLKLE LPSCQSAESA DSVGTQRSSI TNPSPLIPSN NILSEAESYG SNASNFLDAL 360 MQDAHPSEEL EQVRLSMDLI EQLMVHSSGN INPDVASLLL SPQKSRWGKD SDPTTPLAGR 420 TFSDHSEEAS PMCQTGNWDG PQASAMHSFQ CAPQSGAPRT EANMREGLRG GIQQACTDED 480 FLTLLDLANS DPVSEWYSPA ECFSAGGLPC APVPCAPHVD NLVPIPNFQI NGGLNSQSSN 540 QSIPNYVWEF GMGTWNAASV GCHLGEFSSV EYRP* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 3e-32 | 14 | 118 | 5 | 108 | B-MYB |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00490 | DAP | Transfer from AT5G06100 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024383725.1 | 0.0 | transcription factor MYB101-like isoform X2 | ||||
TrEMBL | A0A2K1K4C1 | 0.0 | A0A2K1K4C1_PHYPA; Uncharacterized protein | ||||
STRING | PP1S238_71V6.1 | 0.0 | (Physcomitrella patens) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G06100.1 | 1e-69 | myb domain protein 33 |
Link Out ? help Back to Top | |
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Phytozome | Pp3c9_24170V3.1.p |