PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pp3c9_23170V3.2.p

Organism

Physcomitrella patens

Taxonomic ID

3218

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella

Family

HRT-like

Protein Properties

Length: 602aa MW: 66858.6 Da PI: 10.2921

Description

HRT-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pp3c9_23170V3.2.p	genome	COSMOSS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HRT-like	34.1	4.5e-11	375	399	2	26
HRT-like 2 CGviledGsvCkrqPvkgRKRCeeH 26 CGv+le+G vC++ P gRKRC H Pp3c9_23170V3.2.p 375 CGVMLENGLVCNALPQMGRKRCLVH 399 ***********************99 PP

Sequence ? help Back to Top
Protein Sequence Length: 602 aa Download sequence Send to blast
MNGLRKSSGR VGHASGMALR WRREDFDSVK HDKYFSEWKV LVAPSDWKEQ AAGRNGGDRF 60 RYRNLPSPHA GAGIYELGIT LPAWKTEDLL TETGSLKSED IIVVYVGHAD HIRNRLQRYG 120 QAGAHLEGLR SPNFSNFSTP SQSPNLSTPS RSSKTNSAHG DDRHTSNDEE PIMSKLKYRV 180 DGDRYSSISI SRKSTTEKQL STPNRHIPVG GSVSPAHSSG RGSPRGPRLF SEVFALGCSI 240 AYRWSSTTTI ELAEFVVSEL ADAFDYAWNR GRNSEVRSQD IIEKIVLGKR RHSTSCCSIN 300 SSRWARLIFK RKLVGIKILG AYKPAEGRTR RRPGQRGAGR GPFLLLIKSP HLMILGGKSV 360 KHCEFTKIII PVDRCGVMLE NGLVCNALPQ MGRKRCLVHM DVNRSRQLKS SQAQDFRSGS 420 SGSDNHSADS YNMNSHSTPR RSAPAAPSSP CFPSLTTRKS PKIPEETRKR GSVSFNTWLC 480 KSEILRVKSF EWLVAMEEIK GRGNDNCSTS PILKPDVQSS ETNSNEQIAV RVSRASLNLA 540 PVVETVPEQD PEFVLYAPEV DCGMPCRVVP QRSNTRWPPA PMLDSYATTY NPPQFPRISF 600 T*

Sequence ? help Back to Top

Protein Sequence Length: 602 aa Download sequence Send to blast

MNGLRKSSGR VGHASGMALR WRREDFDSVK HDKYFSEWKV LVAPSDWKEQ AAGRNGGDRF  60
RYRNLPSPHA GAGIYELGIT LPAWKTEDLL TETGSLKSED IIVVYVGHAD HIRNRLQRYG  120
QAGAHLEGLR SPNFSNFSTP SQSPNLSTPS RSSKTNSAHG DDRHTSNDEE PIMSKLKYRV  180
DGDRYSSISI SRKSTTEKQL STPNRHIPVG GSVSPAHSSG RGSPRGPRLF SEVFALGCSI  240
AYRWSSTTTI ELAEFVVSEL ADAFDYAWNR GRNSEVRSQD IIEKIVLGKR RHSTSCCSIN  300
SSRWARLIFK RKLVGIKILG AYKPAEGRTR RRPGQRGAGR GPFLLLIKSP HLMILGGKSV  360
KHCEFTKIII PVDRCGVMLE NGLVCNALPQ MGRKRCLVHM DVNRSRQLKS SQAQDFRSGS  420
SGSDNHSADS YNMNSHSTPR RSAPAAPSSP CFPSLTTRKS PKIPEETRKR GSVSFNTWLC  480
KSEILRVKSF EWLVAMEEIK GRGNDNCSTS PILKPDVQSS ETNSNEQIAV RVSRASLNLA  540
PVVETVPEQD PEFVLYAPEV DCGMPCRVVP QRSNTRWPPA PMLDSYATTY NPPQFPRISF  600
T*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Ppa.9323	0.0	protonema

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024385047.1	0.0	uncharacterized protein LOC112286897 isoform X1
Refseq	XP_024385048.1	0.0	uncharacterized protein LOC112286897 isoform X1
TrEMBL	A9TCB1	0.0	A9TCB1_PHYPA; Predicted protein
STRING	PP1S203_4V6.1	0.0	(Physcomitrella patens)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP5248	14	20

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G56780.1	3e-20	effector of transcription2

Link Out ? help Back to Top
Phytozome	Pp3c9_23170V3.2.p