PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pp3c9_22230V3.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
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Family | C2H2 | ||||||||
Protein Properties | Length: 391aa MW: 44135.2 Da PI: 7.4025 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 18.7 | 4.8e-06 | 226 | 245 | 1 | 20 |
EEETTTTEEESSHHHHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLkrHi 20 ++Cp C+k+F+r n++ H+ Pp3c9_22230V3.2.p 226 FSCPVCNKTFNRYNNMQMHM 245 89*****************9 PP | |||||||
2 | zf-C2H2 | 12.3 | 0.00053 | 310 | 332 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C +C+k F + + ++H +++ Pp3c9_22230V3.2.p 310 FMCRKCSKAFAVRGDWRTHEKNC 332 89*****************9987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 1.61E-5 | 222 | 248 | No hit | No description |
SMART | SM00355 | 0.025 | 226 | 248 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 10.305 | 226 | 253 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF12874 | 9.6E-5 | 226 | 245 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 7.6E-7 | 226 | 245 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE pattern | PS00028 | 0 | 228 | 248 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 4.95E-6 | 291 | 330 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 7.3E-5 | 297 | 330 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SMART | SM00355 | 73 | 310 | 330 | IPR015880 | Zinc finger, C2H2-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009860 | Biological Process | pollen tube growth | ||||
GO:0010500 | Biological Process | transmitting tissue development | ||||
GO:1990058 | Biological Process | fruit replum development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 391 aa Download sequence Send to blast |
MSSRYNPQNS VAVAHPNIPT TFCEWLKPSQ PGQPLSHYPV AIPYEGVYPG FATGSSSESY 60 FPVQPRSPAP VHRLQYPPAD QYGYSCNSHQ QSHDQFYNQQ TRDEHEWRQR WHLQNNSMSS 120 EPLPFLSLSP PTGRDDLSDS VMRTAILLPE ASHASEESDE NVTVALHIGP PSSDAMSMSR 180 STESPSVYDS LSLAERERLQ RGRGRLLEGE YWIPTPAQIL VGPTQFSCPV CNKTFNRYNN 240 MQMHMWGHGS QYRKGPESLR GTQPTAMLRL PCYCCAPGCR NNIDHPRSKP LKDFRTLQTH 300 YKRKHGIKPF MCRKCSKAFA VRGDWRTHEK NCGKLWFCTC GSDFKHKRSL KDHIRAFGNG 360 HAAHGMDSCE DEEDAVSEED IDEEVSGGSQ * |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Ppa.18320 | 0.0 | protonema |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in developing carpels (PubMed:17600712). Expressed in the shoot apical meristem and the replum (PubMed:25039392). {ECO:0000269|PubMed:17600712}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator required for normal differentiation of the ovary transmitting tract cells and pollen tube growth. In Arabidopsis, the transmitting tract facilitates the transport of pollen tubes to the ovules for fertilization (PubMed:17600712). May play a role in the regulation of AGL8/FUL, which is required for normal pattern of cell division, expansion and differentiation during morphogenesis of the silique (PubMed:23515580). Plays a role in replum development by the activation of the homeobox protein KNAT1 (PubMed:25039392). {ECO:0000269|PubMed:17600712, ECO:0000269|PubMed:23515580, ECO:0000269|PubMed:25039392}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024385058.1 | 0.0 | zinc finger protein WIP6-like | ||||
Refseq | XP_024385059.1 | 0.0 | zinc finger protein WIP6-like | ||||
Swissprot | Q9SVY1 | 1e-116 | ZWIP2_ARATH; Zinc finger protein WIP2 | ||||
TrEMBL | A0A2K1K471 | 0.0 | A0A2K1K471_PHYPA; Uncharacterized protein | ||||
STRING | PP1S203_59V6.1 | 0.0 | (Physcomitrella patens) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G57670.1 | 1e-115 | C2H2 family protein |
Link Out ? help Back to Top | |
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Phytozome | Pp3c9_22230V3.2.p |
Publications ? help Back to Top | |||
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