PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pp3c9_2020V3.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
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Family | ERF | ||||||||
Protein Properties | Length: 335aa MW: 36452.5 Da PI: 8.0477 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 63.7 | 3.8e-20 | 20 | 69 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +++GVr ++ +gr++AeIrd ++ ++r++lg+f+taeeAa+a++ a+++l+g Pp3c9_2020V3.2.p 20 HFRGVRKRP-WGRFAAEIRDpWK----KTRVWLGTFDTAEEAARAYDSAARALRG 69 69*******.**********883....5*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 2.3E-13 | 20 | 69 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 2.2E-31 | 20 | 77 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 9.0E-37 | 20 | 83 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 4.82E-31 | 20 | 76 | No hit | No description |
SuperFamily | SSF54171 | 1.44E-21 | 20 | 77 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 22.813 | 20 | 77 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 7.4E-11 | 21 | 32 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 7.4E-11 | 43 | 59 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 335 aa Download sequence Send to blast |
MASREEKAFT KGSQADQGVH FRGVRKRPWG RFAAEIRDPW KKTRVWLGTF DTAEEAARAY 60 DSAARALRGS KAKTNFSCPP SSDDQSTSQS STVESWSTPP SAHNAYLPHH QHQQPLKNPH 120 TSHHQLLRPT AASEADSWRT RLDLNLSAMA SQDHHYQVQE MAQVLNESIS AGRSYVSPGG 180 GIELAYSGKR PSSTPVQTLF QDAMGIASKS VKKPLTHSVP VLEVSPSQWS MDGRRDHNAA 240 LVMGFQPTLL APGSATTPEA RACSSDCDSS SSVILNSESP EIVAALLQKT NPAARESPPF 300 LLDLNFPPSS DDQPADKAVD NFCSSRPRLS KFFD* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 4e-20 | 17 | 76 | 2 | 62 | ATERF1 |
3gcc_A | 4e-20 | 17 | 76 | 2 | 62 | ATERF1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Ppa.2170 | 1e-119 | gametophore| protonema| sporophyte |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024385682.1 | 0.0 | ethylene-responsive transcription factor 7-like | ||||
TrEMBL | A0A2K1K1M1 | 0.0 | A0A2K1K1M1_PHYPA; Uncharacterized protein | ||||
STRING | PP1S90_184V6.1 | 0.0 | (Physcomitrella patens) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G28360.1 | 6e-23 | ERF domain protein 12 |
Link Out ? help Back to Top | |
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Phytozome | Pp3c9_2020V3.2.p |