PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pp3c9_18600V3.2.p | ||||||||
Common Name | PHYPADRAFT_229964 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
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Family | bHLH | ||||||||
Protein Properties | Length: 480aa MW: 51751.8 Da PI: 6.1396 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 46.5 | 6.3e-15 | 237 | 286 | 1 | 55 |
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +r++h +Er+RR+++N++f+ Lr ++Pka +K +Ka+i+ +++Y+ +L+ Pp3c9_18600V3.2.p 237 QRENHILAERQRREEMNEKFSALRAMIPKA-----TKKDKASIVGDTIDYVLELE 286 79****************************.....9***************9985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 16.469 | 236 | 285 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 2.4E-12 | 237 | 286 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 2.62E-15 | 237 | 290 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 2.0E-17 | 237 | 298 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 1.44E-16 | 237 | 300 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 9.8E-13 | 242 | 291 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF55021 | 2.0E-5 | 397 | 464 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0025017 | anatomy | plant spore | ||||
PO:0030018 | anatomy | gametophore |
Sequence ? help Back to Top |
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Protein Sequence Length: 480 aa Download sequence Send to blast |
MDQRRTSAAQ PALPSSLLLS EDLYDLLQGN RFSTTTSTTS ASPTTSTLSS GAATTLSDVK 60 SNPNSLQDPL NHFIFDQIAP APGALKMEPE IGDFMSNSYN WMPTTQLYNV DSLSCLTNYN 120 TNHLPHQLPS TSQFSYSPPQ PSVQSSSQIQ ALRDFMVYGN LADPIMPTPQ FSSAVSSRAT 180 TPIGNSLLYQ LDDVGTDSLI GISPGVQSKP QDMNLAYRAL CSEIYATERS PHRSQFQREN 240 HILAERQRRE EMNEKFSALR AMIPKATKKD KASIVGDTID YVLELEKRLK HLQACKDTAS 300 GSPFIRSLKR KSPSTSANTA SVHQDSPTDA VTKDCDAPDH RGTNPATTTT SSPSSTSPSR 360 EGHSAVNSPS DQVTQESKLQ QAGKKAAAAE VEVQSLGSRA VIKIVVERRP GHVLSVLNAL 420 EECKVEVMQS NVMTVGESSI HFVTVQLEEG ASASTEELVS AILQAINPPK AKGDPPPTC* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024384191.1 | 0.0 | transcription factor FAMA-like isoform X1 | ||||
TrEMBL | A9SKT1 | 0.0 | A9SKT1_PHYPA; Predicted protein | ||||
STRING | PP1S89_172V6.1 | 0.0 | (Physcomitrella patens) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP15271 | 3 | 4 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G63650.3 | 1e-17 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Pp3c9_18600V3.2.p |
Entrez Gene | 5930212 |
Publications ? help Back to Top | |||
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