PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pp3c9_18520V3.3.p

Organism

Physcomitrella patens

Taxonomic ID

3218

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella

Family

HB-other

Protein Properties

Length: 306aa MW: 34082.8 Da PI: 7.2751

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pp3c9_18520V3.3.p	genome	COSMOSS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	52.1	1.1e-16	25	78	4	57
-SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 R + +++q+e+Le++++ ++yps+++r+ L ++l+L+++q ++WF rR+k+++ Pp3c9_18520V3.3.p 25 RKKKSASQTEVLERAYAVEKYPSEATRKLLGRELDLSDKQLQIWFTHRRYKDRR 78 88899***********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	8.8E-17	3	78	IPR009057	Homeodomain-like
SuperFamily	SSF46689	1.92E-15	5	78	IPR009057	Homeodomain-like
PROSITE profile	PS50071	15.24	19	79	IPR001356	Homeobox domain
SMART	SM00389	4.9E-15	21	83	IPR001356	Homeobox domain
Pfam	PF00046	2.6E-14	25	78	IPR001356	Homeobox domain
CDD	cd00086	3.59E-14	25	78	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 306 aa Download sequence Send to blast
MASDGSSPHT SPAPSPPEKP KGISRKKKSA SQTEVLERAY AVEKYPSEAT RKLLGRELDL 60 SDKQLQIWFT HRRYKDRRDG IDDEKLTFYA KNKTQDHMST QECRSSKKEE IDQHMIEEDS 120 EPDGYPARVL AEERDDDELI AEHEHTNGMD AANNGGYGEL EKVKPGPKRR GGPRVPKDPN 180 RPPRRPGPKP KFNAMAAAER QAIIAVESQL CGPLREDGPP LGFEFDPLPP RAFTELPITE 240 VPHNAGVSRD GGSESYSERT ALQNKWTKEV EITDNKKRKI GGLQTSGSQA QYSSVHKPSR 300 GENGY*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	71	78	RRYKDRRD

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Ppa.4597	0.0	gametophore\| protonema

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024384481.1	0.0	homeobox-DDT domain protein RLT1-like
Refseq	XP_024384482.1	0.0	homeobox-DDT domain protein RLT1-like
TrEMBL	A0A2K1K3Q1	0.0	A0A2K1K3Q1_PHYPA; Uncharacterized protein
STRING	PP1S89_188V6.1	0.0	(Physcomitrella patens)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G44180.2	8e-21	Homeodomain-like transcriptional regulator

Link Out ? help Back to Top
Phytozome	Pp3c9_18520V3.3.p