PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c9_15270V3.4.p
Common NamePHYPADRAFT_229758
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family C2H2
Protein Properties Length: 484aa    MW: 53058.2 Da    PI: 8.5839
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c9_15270V3.4.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.97.8e-05206230123
                        EEET..TTTEEESSHHHHHHHHHHT CS
            zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                        y+C    C k+F+++ +++ H +tH
  Pp3c9_15270V3.4.p 206 YQCAfaGCQKTFKNPQTMRMHHKTH 230
                        99**********************9 PP
2zf-C2H212.60.00042262280220
                        EETTTTEEESSHHHHHHHH CS
            zf-C2H2   2 kCpdCgksFsrksnLkrHi 20 
                        +Cp C k+F   ++L+rH 
  Pp3c9_15270V3.4.p 262 RCPTCYKTFVGLYELRRHF 280
                        7*****************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.21E-6202231No hitNo description
Gene3DG3DSA:3.30.160.601.1E-8204233IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.658206235IPR007087Zinc finger, C2H2
SMARTSM003550.0021206230IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280208230IPR007087Zinc finger, C2H2
SMARTSM003553.1261284IPR015880Zinc finger, C2H2-like
SuperFamilySSF576672.48E-5261311No hitNo description
PROSITE patternPS000280263284IPR007087Zinc finger, C2H2
SMARTSM0035587291311IPR015880Zinc finger, C2H2-like
SMARTSM0035594317338IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000006anatomyplant protoplast
PO:0025017anatomyplant spore
PO:0030003anatomyprotonema
PO:0030018anatomygametophore
Sequence ? help Back to Top
Protein Sequence    Length: 484 aa     Download sequence    Send to blast
MPDVSMVQQG LNYPATPEWP LYEKTSFLPL LDNVAMTSQS LAGTSTPPFG ITRLSRSQSQ  60
VLQFLDSGTV FDPPSTPSHE RAPLLDLHPT KLNSPSPINT PVMHPNLVCT LKSILSPKLE  120
FNGQTTSGDC GFTQYSGYSQ VIEMAELQGS EHGNSLGADY PGKSSPEITF RPSNNNNLKQ  180
MPDNANFLQQ KAILVPVDLI QNRRPYQCAF AGCQKTFKNP QTMRMHHKTH FSDAAAAQLG  240
AEAVLTATAP LKAGHNKKIP SRCPTCYKTF VGLYELRRHF GRKHSEGEKS HACRKCGKRF  300
HIEVDVRDHE KLCGEPIVCS CGMKFAFKCN LVAHRRSHPK CQDRPVAAET EKRLARKPLN  360
SEESTRGLSD MPVQNFSVVT RIAAEMASAR PQLPQSVPPI PLLDSASASS LFSSTTSSPS  420
TSALVAETLP DFDTSSSNLE FQYSPLSSAF LQADSYIKFP SDHYLLAASP KSSVYQVLQR  480
PSN*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024384176.10.0protein TRANSPARENT TESTA 1-like isoform X1
RefseqXP_024384177.10.0protein TRANSPARENT TESTA 1-like isoform X1
RefseqXP_024384179.10.0protein TRANSPARENT TESTA 1-like isoform X1
RefseqXP_024384180.10.0protein TRANSPARENT TESTA 1-like isoform X1
TrEMBLA9SH880.0A9SH88_PHYPA; Predicted protein
STRINGPP1S78_222V6.10.0(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50700.13e-11indeterminate(ID)-domain 2
Publications ? help Back to Top
  1. Rensing SA, et al.
    The Physcomitrella genome reveals evolutionary insights into the conquest of land by plants.
    Science, 2008. 319(5859): p. 64-9
    [PMID:18079367]