PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pp3c9_14600V3.1.p

Organism

Physcomitrella patens

Taxonomic ID

3218

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella

Family

Nin-like

Protein Properties

Length: 1152aa MW: 125929 Da PI: 5.6727

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pp3c9_14600V3.1.p	genome	COSMOSS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	90.2	1.6e-28	703	753	2	52
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ek+i l++l++yF++++kdAAk++gvc+T+LKriCRq+GI+RWP+Rki+++ Pp3c9_14600V3.1.p 703 EKTIGLSVLQQYFAGSLKDAAKSIGVCPTTLKRICRQHGISRWPSRKINKV 753 799**********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	17.188	685	773	IPR003035	RWP-RK domain
Pfam	PF02042	3.9E-25	706	753	IPR003035	RWP-RK domain
SuperFamily	SSF54277	1.18E-21	1043	1138	No hit	No description
SMART	SM00666	3.8E-15	1053	1135	IPR000270	PB1 domain
PROSITE profile	PS51745	21.017	1053	1135	IPR000270	PB1 domain
Gene3D	G3DSA:3.10.20.240	1.0E-20	1054	1133	No hit	No description
Pfam	PF00564	5.3E-15	1054	1132	IPR000270	PB1 domain
CDD	cd06407	3.50E-32	1054	1133	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 1152 aa Download sequence Send to blast
MPPSKTEVAM GANSGEIGSK FVVDDSLLSD LMDLDPLSEQ LGEESWMNGG SGSDNCDFNL 60 TSYSVSSSEN CYASISPSSP PTSHSSSIFS QTSEADLDAL QLLQQVFDGS PSPFSPPLSP 120 SPVGDGNITM LLADQNIITT SNAMEYTDPS EKCRIDTPFL AMPNEEEEDE AEEKSGLSEE 180 EKVVEEGGTR KRTLARALSS SPVCLRDRLL QAVRYIGRFR MDVLVQIWMP QQTSSNPQKR 240 ILTTRDQPFI LEQRNDKLLH FRNASESYEF AAEAGNSGLG LPGRVFVHQM PEWSPNVQIY 300 NCQEYLRHLE AQRCDVRGSL ALPVFEPTTL QCVAVIELVG CTEKIQFFSD VDIISRAVQA 360 VHLSSVNSLE TPVPERLSLG RHSVLNEIAE VLTAVCETHK LPLAQTWVPA CRYGSMDIKV 420 HQSGSKRMRS ENGSFLSHSA SSCPCNSEIL RTGDGPCYMN DGRICGFRRA CLEHSVETGQ 480 GVVGKAFETN QPSFDSDVKT HSKAEYPLAH YAKCFGLGAA VAIRLRSVRT GNDDFILEFF 540 LPPTCVDSKE QQLLLNSLSI TMQRTCRSLR TVTDKELEEE RSRTGNGNVV VKIEAKEEPN 600 DGGSVLYPQN PIGNQEGMLF TSSGDRDQDQ ATHYQIPQPS LLNQFSFQRN SNWQPSDSLH 660 PGEPQHHASY IDPLGNHALG CSNTAQDAAS QRRRLDRRRG TTEKTIGLSV LQQYFAGSLK 720 DAAKSIGVCP TTLKRICRQH GISRWPSRKI NKVSRSLKKL QGVIDSVQGA DGALRINALT 780 GDITTASMAV DASTDHIGSD GACAKSKWCV SWSTPALRNH ELEEHKVRGD TLSVPEEEDR 840 KKHDSCSPQS VLMSILSFPT AKSSRICQAN KSRDGSPAED GSPMIGHNSG GRTTRILSPR 900 RNLTVGTGDA AVHDGITVHH NLPVARSQQG SPISGSYDDI VSSTSKAGSI KNELPESMTS 960 SGCQTQAHND ANAHEAFEEV CIKKLNVEVP VSSSSHREDG DQERKVMGGS GTFNSDSPRF 1020 GSSTAQGTSD CSSPSSEGNP SLHKKTWPTH GDVVTIKVTH DDDTVRFKLA CDKSYLDLRD 1080 EVNQRLKLTK VTFDLKYLDD DEEWMLLACD ADLQECLDVM RASGRSAIKL MVRCNVSSRA 1140 GTTCVDDKSQ S*

Sequence ? help Back to Top

Protein Sequence Length: 1152 aa Download sequence Send to blast

MPPSKTEVAM GANSGEIGSK FVVDDSLLSD LMDLDPLSEQ LGEESWMNGG SGSDNCDFNL  60
TSYSVSSSEN CYASISPSSP PTSHSSSIFS QTSEADLDAL QLLQQVFDGS PSPFSPPLSP  120
SPVGDGNITM LLADQNIITT SNAMEYTDPS EKCRIDTPFL AMPNEEEEDE AEEKSGLSEE  180
EKVVEEGGTR KRTLARALSS SPVCLRDRLL QAVRYIGRFR MDVLVQIWMP QQTSSNPQKR  240
ILTTRDQPFI LEQRNDKLLH FRNASESYEF AAEAGNSGLG LPGRVFVHQM PEWSPNVQIY  300
NCQEYLRHLE AQRCDVRGSL ALPVFEPTTL QCVAVIELVG CTEKIQFFSD VDIISRAVQA  360
VHLSSVNSLE TPVPERLSLG RHSVLNEIAE VLTAVCETHK LPLAQTWVPA CRYGSMDIKV  420
HQSGSKRMRS ENGSFLSHSA SSCPCNSEIL RTGDGPCYMN DGRICGFRRA CLEHSVETGQ  480
GVVGKAFETN QPSFDSDVKT HSKAEYPLAH YAKCFGLGAA VAIRLRSVRT GNDDFILEFF  540
LPPTCVDSKE QQLLLNSLSI TMQRTCRSLR TVTDKELEEE RSRTGNGNVV VKIEAKEEPN  600
DGGSVLYPQN PIGNQEGMLF TSSGDRDQDQ ATHYQIPQPS LLNQFSFQRN SNWQPSDSLH  660
PGEPQHHASY IDPLGNHALG CSNTAQDAAS QRRRLDRRRG TTEKTIGLSV LQQYFAGSLK  720
DAAKSIGVCP TTLKRICRQH GISRWPSRKI NKVSRSLKKL QGVIDSVQGA DGALRINALT  780
GDITTASMAV DASTDHIGSD GACAKSKWCV SWSTPALRNH ELEEHKVRGD TLSVPEEEDR  840
KKHDSCSPQS VLMSILSFPT AKSSRICQAN KSRDGSPAED GSPMIGHNSG GRTTRILSPR  900
RNLTVGTGDA AVHDGITVHH NLPVARSQQG SPISGSYDDI VSSTSKAGSI KNELPESMTS  960
SGCQTQAHND ANAHEAFEEV CIKKLNVEVP VSSSSHREDG DQERKVMGGS GTFNSDSPRF  1020
GSSTAQGTSD CSSPSSEGNP SLHKKTWPTH GDVVTIKVTH DDDTVRFKLA CDKSYLDLRD  1080
EVNQRLKLTK VTFDLKYLDD DEEWMLLACD ADLQECLDVM RASGRSAIKL MVRCNVSSRA  1140
GTTCVDDKSQ S*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024384005.1	0.0	protein NLP5-like
TrEMBL	A0A2K1K368	0.0	A0A2K1K368_PHYPA; Uncharacterized protein
STRING	PP1S302_9V6.1	0.0	(Physcomitrella patens)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP299	16	97

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G76350.1	1e-123	Nin-like family protein

Link Out ? help Back to Top
Phytozome	Pp3c9_14600V3.1.p