PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c9_14170V3.2.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family G2-like
Protein Properties Length: 478aa    MW: 50967.3 Da    PI: 7.1621
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c9_14170V3.2.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like95.63.7e-30288341155
            G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                        +prl+Wtp+LH+rFv+av +L G+++A+Pkti++lm+v+gLt+e+v+SHLQkYRl
  Pp3c9_14170V3.2.p 288 RPRLVWTPQLHKRFVDAVGHL-GIKNAVPKTIMQLMNVEGLTRENVASHLQKYRL 341
                        59*******************.********************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512949.927285344IPR017930Myb domain
SuperFamilySSF466891.24E-19285345IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.2E-30287346IPR009057Homeodomain-like
TIGRFAMsTIGR015571.0E-23289341IPR006447Myb domain, plants
PfamPF002493.0E-7291340IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 478 aa     Download sequence    Send to blast
MHAFEIARAL GMTMKEDDHV VDWNHSLPTG EEVTPLSKSL ISPVLASAFS IMPDLAKTAA  60
HVSRETRPSL LDLRVQSSIS MSFDPFSPFK QRNDAGVYGC LAEAGDDRDG RGVGQFDKRG  120
KSITADFTAE GRGDARGDGR GTAEPEVEVG LGLGLGSGGS CSNRECDRVT VAERQRSGSH  180
GGGSFSQGHP MSGVFRGGSD GATYNPSEGR SEQSSGLPFM KNGLQGYGSG YERRPESSSY  240
GGRGDDSSKG GGSAKNARKL ADSDFEDTDS GGGPVNSNEE ANARTLKRPR LVWTPQLHKR  300
FVDAVGHLGI KNAVPKTIMQ LMNVEGLTRE NVASHLQKYR LYLKRMQGLP SDGPMANDQL  360
FASTSLPSNL GMQYMTNQRE EVGPASYPAV GVAMPFPGGG VGPLGTAQFG GYEQMSYDGV  420
NRRFVQRPAT KDRTEHISES ENGNHASPQS QNAHSYVENR AGSPPRRLLS LFPTSSG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5lxu_A2e-33288344157Transcription factor LUX
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1131140RGDARGDGRG
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ppa.85031e-106gametophore| protonema
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9642151e-34EU964215.1 Zea mays clone 276988 hypothetical protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024385661.10.0uncharacterized protein LOC112287146 isoform X1
TrEMBLA0A2K1K3620.0A0A2K1K362_PHYPA; Uncharacterized protein
STRINGPP1S29_32V6.10.0(Physcomitrella patens)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP11571753
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G46640.28e-47G2-like family protein