![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Pp3c9_14170V3.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
|
||||||||
Family | G2-like | ||||||||
Protein Properties | Length: 478aa MW: 50967.3 Da PI: 7.1621 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 95.6 | 3.7e-30 | 288 | 341 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 +prl+Wtp+LH+rFv+av +L G+++A+Pkti++lm+v+gLt+e+v+SHLQkYRl Pp3c9_14170V3.2.p 288 RPRLVWTPQLHKRFVDAVGHL-GIKNAVPKTIMQLMNVEGLTRENVASHLQKYRL 341 59*******************.********************************8 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 9.927 | 285 | 344 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.24E-19 | 285 | 345 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 2.2E-30 | 287 | 346 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 1.0E-23 | 289 | 341 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 3.0E-7 | 291 | 340 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 478 aa Download sequence Send to blast |
MHAFEIARAL GMTMKEDDHV VDWNHSLPTG EEVTPLSKSL ISPVLASAFS IMPDLAKTAA 60 HVSRETRPSL LDLRVQSSIS MSFDPFSPFK QRNDAGVYGC LAEAGDDRDG RGVGQFDKRG 120 KSITADFTAE GRGDARGDGR GTAEPEVEVG LGLGLGSGGS CSNRECDRVT VAERQRSGSH 180 GGGSFSQGHP MSGVFRGGSD GATYNPSEGR SEQSSGLPFM KNGLQGYGSG YERRPESSSY 240 GGRGDDSSKG GGSAKNARKL ADSDFEDTDS GGGPVNSNEE ANARTLKRPR LVWTPQLHKR 300 FVDAVGHLGI KNAVPKTIMQ LMNVEGLTRE NVASHLQKYR LYLKRMQGLP SDGPMANDQL 360 FASTSLPSNL GMQYMTNQRE EVGPASYPAV GVAMPFPGGG VGPLGTAQFG GYEQMSYDGV 420 NRRFVQRPAT KDRTEHISES ENGNHASPQS QNAHSYVENR AGSPPRRLLS LFPTSSG* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5lxu_A | 2e-33 | 288 | 344 | 1 | 57 | Transcription factor LUX |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 131 | 140 | RGDARGDGRG |
Expression -- UniGene ? help Back to Top | ||||||
---|---|---|---|---|---|---|
UniGene ID | E-value | Expressed in | ||||
Ppa.8503 | 1e-106 | gametophore| protonema |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | EU964215 | 1e-34 | EU964215.1 Zea mays clone 276988 hypothetical protein mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_024385661.1 | 0.0 | uncharacterized protein LOC112287146 isoform X1 | ||||
TrEMBL | A0A2K1K362 | 0.0 | A0A2K1K362_PHYPA; Uncharacterized protein | ||||
STRING | PP1S29_32V6.1 | 0.0 | (Physcomitrella patens) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP1157 | 17 | 53 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G46640.2 | 8e-47 | G2-like family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Pp3c9_14170V3.2.p |