PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c9_14080V3.2.p
Common NamePHYPADRAFT_70654
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family ERF
Protein Properties Length: 353aa    MW: 40366.1 Da    PI: 8.4749
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c9_14080V3.2.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP238.82.3e-12261300348
                AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaia 48 
                        + GVr+  ++g+Wv+eIr++s+   +++++lg+f+t e+Aa++a  
  Pp3c9_14080V3.2.p 261 FIGVRR--RNGKWVSEIRVFSS---SRKVWLGSFDT-EKAAALAFD 300
                        789*84..47*********854...4**********.999999965 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103214.355251316IPR001471AP2/ERF domain
PfamPF008471.0E-5260299IPR001471AP2/ERF domain
SMARTSM003801.8E-6260322IPR001471AP2/ERF domain
CDDcd000181.06E-13260318No hitNo description
Gene3DG3DSA:3.30.730.105.1E-17261318IPR001471AP2/ERF domain
SuperFamilySSF541711.96E-11261318IPR016177DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000006anatomyplant protoplast
PO:0025017anatomyplant spore
PO:0030003anatomyprotonema
PO:0030018anatomygametophore
Sequence ? help Back to Top
Protein Sequence    Length: 353 aa     Download sequence    Send to blast
MTGKKPCQWG MLVRQSHAVG RFKDRLRRLR DRDFMRFCEK FFCTSGASDS AHRHHSTEGS  60
STPTQFYDSQ TLGDWQALYE SCEPGLPRFQ RNLDGAQDED ETPLLHRTDS DYSMLLDSAS  120
CSVPQHPHGL PLPTSNREDR DLYSSDSFNP LPSSKGSADE CDDMISELCY DSKGLQLNSS  180
AMAEGIRDVG GFSSTLALYA WAVENCVIDE EEEHDQSTGR RGWHIMKRIF SACKWMSRMR  240
RFRRRARART RYRSADHSER FIGVRRRNGK WVSEIRVFSS SRKVWLGSFD TEKAAALAFD  300
AGKYHSSTRY DKFNFPDSPQ LLGPKKDLHL LPPEKIKTEL KKVAKDFAEG NY*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1242252RRRARARTRYR
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ppa.18300.0gametophore| protonema
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024384574.10.0uncharacterized protein LOC112286679
RefseqXP_024384575.10.0uncharacterized protein LOC112286679
TrEMBLA0A2K1K3600.0A0A2K1K360_PHYPA; Uncharacterized protein
TrEMBLA9RUB10.0A9RUB1_PHYPA; Predicted protein
STRINGPP1S29_45V6.10.0(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19210.14e-16ERF family protein
Publications ? help Back to Top
  1. Rensing SA, et al.
    The Physcomitrella genome reveals evolutionary insights into the conquest of land by plants.
    Science, 2008. 319(5859): p. 64-9
    [PMID:18079367]