PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c9_1370V3.1.p
Common NamePHYPADRAFT_235384, PPMA10
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family M-type_MADS
Protein Properties Length: 425aa    MW: 47928.3 Da    PI: 7.9414
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c9_1370V3.1.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF88.73e-28959151
                      S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
            SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                      k+ien +nrqvt+skRrng++KKA+ELSvLCd++va+i+fs++gkl  ys+
  Pp3c9_1370V3.1.p  9 KKIENPTNRQVTYSKRRNGLIKKAYELSVLCDIDVALIMFSPSGKLTQYSN 59
                      68***********************************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006629.562161IPR002100Transcription factor, MADS-box
SMARTSM004326.9E-38160IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.1E-31288IPR002100Transcription factor, MADS-box
CDDcd002659.25E-38271No hitNo description
PRINTSPR004042.6E-26323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003195.7E-261057IPR002100Transcription factor, MADS-box
PRINTSPR004042.6E-262338IPR002100Transcription factor, MADS-box
PRINTSPR004042.6E-263859IPR002100Transcription factor, MADS-box
PROSITE profilePS512978.625138247IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010152Biological Processpollen maturation
GO:0080092Biological Processregulation of pollen tube growth
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 425 aa     Download sequence    Send to blast
MGRVKLEIKK IENPTNRQVT YSKRRNGLIK KAYELSVLCD IDVALIMFSP SGKLTQYSNC  60
SIEDVITRFA NLPMHERNKS FEDMLTRFAN YHMIHDRSKY TRKPENLEYL HRALKKLNGE  120
KDLAANHQLL TGNKSYEVGL LQEELKKSQQ EKELVQQRAR LYLADEHLLQ NITSVQQLAN  180
METELEQALE RVRARKSYVS SAYQAASAIH RQQHEFLGNS YQQMVALRQQ QQQQQQQQQQ  240
HHHQHQAGIA GTPSPFLQWN MPERNEATLQ DFMEQQSNPS QAIVPAQMTR ELVVGNGEAS  300
PTGNHFFPGA ASQSNLHNLG QIGHLVGSNR GLSIHDMALE QPGGQFEDSQ KKAKLEATMG  360
FASSSSSGAA AEGTAETFTN QSEQAHGSTG ASNWHQAHHH AQAYTNSQYP NGFFNQMRGN  420
ESYQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3mu6_A1e-17269168Myocyte-specific enhancer factor 2A
3mu6_B1e-17269168Myocyte-specific enhancer factor 2A
3mu6_C1e-17269168Myocyte-specific enhancer factor 2A
3mu6_D1e-17269168Myocyte-specific enhancer factor 2A
6byy_A2e-17185185MEF2 CHIMERA
6byy_B2e-17185185MEF2 CHIMERA
6byy_C2e-17185185MEF2 CHIMERA
6byy_D2e-17185185MEF2 CHIMERA
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1582000.0AC158200.2 Physcomitrella patens clone JGIASYB-1A15, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024383905.10.0agamous-like MADS-box protein AGL66 isoform X1
TrEMBLA0A2K1K1J50.0A0A2K1K1J5_PHYPA; Uncharacterized protein
STRINGPP1S90_121V6.20.0(Physcomitrella patens)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP1617761
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22130.19e-36AGAMOUS-like 104
Publications ? help Back to Top
  1. Rensing SA, et al.
    The Physcomitrella genome reveals evolutionary insights into the conquest of land by plants.
    Science, 2008. 319(5859): p. 64-9
    [PMID:18079367]