PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pp3c9_13190V3.2.p | ||||||||
Common Name | PHYPADRAFT_161053 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
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Family | ZF-HD | ||||||||
Protein Properties | Length: 257aa MW: 28529.3 Da PI: 7.7846 | ||||||||
Description | ZF-HD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | ZF-HD_dimer | 23.6 | 1.2e-07 | 19 | 59 | 8 | 55 |
ZF-HD_dimer 8 eClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRr 55 +C k hA l g +DGC+ f + +++ + C ACgCH +FH + Pp3c9_13190V3.2.p 19 KCTKMHAH-L-GPGFDGCQLFDGE-----NPNDVLCGACGCHMSFHVK 59 69999974.4.4579*****9887.....6788*************77 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51523 | 16.066 | 17 | 60 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
Pfam | PF04770 | 5.6E-4 | 19 | 59 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0000006 | anatomy | plant protoplast | ||||
PO:0025017 | anatomy | plant spore | ||||
PO:0030003 | anatomy | protonema | ||||
PO:0030018 | anatomy | gametophore |
Sequence ? help Back to Top |
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Protein Sequence Length: 257 aa Download sequence Send to blast |
MGTAFHLDQA MINSRNRGKC TKMHAHLGPG FDGCQLFDGE NPNDVLCGAC GCHMSFHVKL 60 NLGDSKYRLE NHEVIDLEPG LKRCKMSFEA SPAESVGDNL DSNPGVEVNS GTSQEDLLRV 120 FRSNRLEEQP PVFLQPASIK PERDEIRVND SIPLYRETPL YTKLCSKLKL IQAEYPEAIH 180 GKFSIVHDDV HGYRVYCGGC DRHYGIPKPG YSLGNFERGH LASKRHKDMG AAQGKLKVQK 240 IGSYSQQAPN KTMHFG* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Ppa.2442 | 0.0 | gametophore| protonema |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024385427.1 | 0.0 | uncharacterized protein LOC112287047 | ||||
TrEMBL | A0A2K1K318 | 0.0 | A0A2K1K318_PHYPA; Uncharacterized protein | ||||
TrEMBL | A9RUF4 | 0.0 | A9RUF4_PHYPA; Predicted protein | ||||
STRING | PP1S29_128V6.1 | 0.0 | (Physcomitrella patens) |
Link Out ? help Back to Top | |
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Phytozome | Pp3c9_13190V3.2.p |
Entrez Gene | 5920926 |
Publications ? help Back to Top | |||
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