PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pp3c8_8720V3.2.p

Common Name

PHYPADRAFT_65919

Organism

Physcomitrella patens

Taxonomic ID

3218

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella

Family

G2-like

Protein Properties

Length: 425aa MW: 48234.9 Da PI: 6.4031

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pp3c8_8720V3.2.p	genome	COSMOSS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	31.2	5e-10	1	20	36	55
G2-like 36 mkvkgLtlehvkSHLQkYRl 55 m+vkgLt++hvkSHLQ+YR+ Pp3c8_8720V3.2.p 1 MDVKGLTIAHVKSHLQMYRS 20 9******************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	2.9E-9	1	22	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Plant Ontology ? help Back to Top
PO Term	PO Category	PO Description
PO:0030018	anatomy	gametophore

Sequence ? help Back to Top
Protein Sequence Length: 425 aa Download sequence Send to blast
MDVKGLTIAH VKSHLQMYRS MKNDENGQSG LVQADQMMEY HGTSDTTLLH SSFGLQRNDH 60 FQGQALHVRD SDVTSVPIFP NYLHRQAGIL QQFDHHPVVT SRHDGHGEWT NRAFVPSGLP 120 SGHRDWSENK IQLVEWRKRE ESLAKSSHMA GNSFSNQSRI DMHEDEWPTR PSHSVTLDWE 180 RKRQQPDSIE GRFAAFQEGP WLQPGAIIPT MASSQQLEAL KKQQEKASEW DRWQAQGARQ 240 DLPKQSSRHN ASEERTSTSL DSRMLFKQLL EPSRSSSNVQ EMQHRAREDE VSHRTPGWPV 300 MFGTENQRGF EKYAERSRHA FTEDQADTSS PWTFSQRSEQ AITSTQFNEV HDREPDSTLS 360 LYPFSSHLTQ SSLSPSKPRQ SMSLPDINED HHDFPSSLGL SETLQLSSSQ GVTLDLTMSL 420 GAPG*

Sequence ? help Back to Top

Protein Sequence Length: 425 aa Download sequence Send to blast

MDVKGLTIAH VKSHLQMYRS MKNDENGQSG LVQADQMMEY HGTSDTTLLH SSFGLQRNDH  60
FQGQALHVRD SDVTSVPIFP NYLHRQAGIL QQFDHHPVVT SRHDGHGEWT NRAFVPSGLP  120
SGHRDWSENK IQLVEWRKRE ESLAKSSHMA GNSFSNQSRI DMHEDEWPTR PSHSVTLDWE  180
RKRQQPDSIE GRFAAFQEGP WLQPGAIIPT MASSQQLEAL KKQQEKASEW DRWQAQGARQ  240
DLPKQSSRHN ASEERTSTSL DSRMLFKQLL EPSRSSSNVQ EMQHRAREDE VSHRTPGWPV  300
MFGTENQRGF EKYAERSRHA FTEDQADTSS PWTFSQRSEQ AITSTQFNEV HDREPDSTLS  360
LYPFSSHLTQ SSLSPSKPRQ SMSLPDINED HHDFPSSLGL SETLQLSSSQ GVTLDLTMSL  420
GAPG*

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00301	DAP	Transfer from AT2G40260	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024383450.1	0.0	uncharacterized protein LOC112286102 isoform X1
Refseq	XP_024383451.1	0.0	uncharacterized protein LOC112286102 isoform X2
TrEMBL	A0A2K1K6L7	0.0	A0A2K1K6L7_PHYPA; Uncharacterized protein
TrEMBL	A9RGS9	0.0	A9RGS9_PHYPA; Predicted protein
STRING	PP1S8_227V6.1	0.0	(Physcomitrella patens)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G38300.1	1e-07	G2-like family protein

Link Out ? help Back to Top
Phytozome	Pp3c8_8720V3.2.p
Entrez Gene	5916546

Publications ? help Back to Top
Rensing SA, et al. The Physcomitrella genome reveals evolutionary insights into the conquest of land by plants. Science, 2008. 319(5859): p. 64-9 [PMID:18079367]