PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c8_7340V3.2.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family ERF
Protein Properties Length: 282aa    MW: 30940.7 Da    PI: 6.2601
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c8_7340V3.2.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2621.3e-193585155
               AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                      ++y+GVr +  +g+Wv+eIr+p   +kr r++lg+f tae+Aa+a++aa  +l+g
  Pp3c8_7340V3.2.p 35 PKYRGVRMRQ-WGKWVSEIREP---NKRSRIWLGSFPTAEMAARAYDAAVVCLRG 85
                      79*****998.**********9...336*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.30E-323595No hitNo description
PfamPF008472.9E-123585IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.3E-323695IPR001471AP2/ERF domain
PROSITE profilePS5103223.633693IPR001471AP2/ERF domain
SuperFamilySSF541711.77E-223695IPR016177DNA-binding domain
SMARTSM003801.9E-393699IPR001471AP2/ERF domain
PRINTSPR003674.5E-103748IPR001471AP2/ERF domain
PRINTSPR003674.5E-105975IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 282 aa     Download sequence    Send to blast
MVDKNRTQRA AMEVRAGARH CLAPVKEEET PSASPKYRGV RMRQWGKWVS EIREPNKRSR  60
IWLGSFPTAE MAARAYDAAV VCLRGPHAAL NFPDSPPQSL PECHSPKDIQ VAAAAAAAVA  120
EPCTPVTLPF NGEAQSLDAQ LRSIKNETNL TPRSHQRPAE SENSGTSAER SWKSASKSEV  180
VVDEELDCTG ESTPHAGVEF VSLEDVGLAW DGMKSDDIKF LEGLEDIEFP GSNLYGHADD  240
APRKLMKSFS GRRVVPQYCR QFSGRFEPLG NVPDVYNVFK V*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A6e-1636931472Ethylene-responsive transcription factor ERF096
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ppa.88740.0gametophore
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024383640.10.0ethylene-responsive transcription factor ERF043-like
TrEMBLA0A2K1K6H10.0A0A2K1K6H1_PHYPA; Uncharacterized protein
STRINGPP1S8_127V6.10.0(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G21960.11e-29ERF family protein