PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pp3c8_6920V3.3.p | ||||||||
Common Name | PHYPADRAFT_235345, PPMA8 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 411aa MW: 46361.2 Da PI: 8.1577 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 86.4 | 1.6e-27 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 k+ien +nrqvt+skRrng++KKA+ELSvLCd++ a+++fs++gkl y++ Pp3c8_6920V3.3.p 9 KKIENPTNRQVTYSKRRNGLMKKAYELSVLCDIDLALVMFSPSGKLTQYCN 59 68***********************************************85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 4.1E-37 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 28.777 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 2.35E-31 | 2 | 89 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 5.62E-37 | 2 | 73 | No hit | No description |
PRINTS | PR00404 | 7.6E-26 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 1.4E-25 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 7.6E-26 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 7.6E-26 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS51297 | 8.292 | 136 | 237 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 411 aa Download sequence Send to blast |
MGRVKLEIKK IENPTNRQVT YSKRRNGLMK KAYELSVLCD IDLALVMFSP SGKLTQYCNC 60 SIEEVIGRFA NLSMHERNKS FEDMMTRFSN NQMHHDRSKY NKKVENLEHL HKALKKLAVE 120 QDLVASHQLL SVSKTTYELE QELKKSQLEK ELVQQQARLY LADEQLLRRV SSVQQLANME 180 TELEQALERV RARKNYVSSA YQTASVMQRR QHEFLGNSLQ MMALRQQQAQ QHQAGMAPTQ 240 PSFLHWTMQT ERSAPTPQDF MEQQTNPPTS LVPASLSREL GSEGEANLIP GYFSASQQHS 300 NLEGLRQVGM GVSRGLTMHD MSLEQPNAAH YIEEEKKGKV EASMGFVTSA SAAAVGTEGD 360 SETNLTRVQS EQAHGITNAS DWPPRPANHH PNALGNGNLF FSQNGHHAWK * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3mu6_A | 2e-17 | 2 | 69 | 1 | 68 | Myocyte-specific enhancer factor 2A |
3mu6_B | 2e-17 | 2 | 69 | 1 | 68 | Myocyte-specific enhancer factor 2A |
3mu6_C | 2e-17 | 2 | 69 | 1 | 68 | Myocyte-specific enhancer factor 2A |
3mu6_D | 2e-17 | 2 | 69 | 1 | 68 | Myocyte-specific enhancer factor 2A |
6byy_A | 2e-17 | 1 | 85 | 1 | 85 | MEF2 CHIMERA |
6byy_B | 2e-17 | 1 | 85 | 1 | 85 | MEF2 CHIMERA |
6byy_C | 2e-17 | 1 | 85 | 1 | 85 | MEF2 CHIMERA |
6byy_D | 2e-17 | 1 | 85 | 1 | 85 | MEF2 CHIMERA |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Ppa.16646 | 0.0 | protonema |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024383341.1 | 0.0 | MADS-box protein 04g005320-like isoform X2 | ||||
TrEMBL | A9RGL4 | 0.0 | A9RGL4_PHYPA; MIKC MADS--domain protein PPMA8 | ||||
STRING | PP1S8_101V6.1 | 0.0 | (Physcomitrella patens) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G22130.1 | 1e-30 | AGAMOUS-like 104 |
Link Out ? help Back to Top | |
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Phytozome | Pp3c8_6920V3.3.p |
Entrez Gene | 5916475 |
Publications ? help Back to Top | |||
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