PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c8_6920V3.1.p
Common NamePHYPADRAFT_235345, PPMA8
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family M-type_MADS
Protein Properties Length: 414aa    MW: 46715.7 Da    PI: 8.1577
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c8_6920V3.1.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF86.41.6e-27959151
                      S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
            SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                      k+ien +nrqvt+skRrng++KKA+ELSvLCd++ a+++fs++gkl  y++
  Pp3c8_6920V3.1.p  9 KKIENPTNRQVTYSKRRNGLMKKAYELSVLCDIDLALVMFSPSGKLTQYCN 59
                      68***********************************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004324.1E-37160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006628.777161IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.35E-31289IPR002100Transcription factor, MADS-box
CDDcd002656.00E-37273No hitNo description
PRINTSPR004047.7E-26323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003191.4E-251057IPR002100Transcription factor, MADS-box
PRINTSPR004047.7E-262338IPR002100Transcription factor, MADS-box
PRINTSPR004047.7E-263859IPR002100Transcription factor, MADS-box
PROSITE profilePS512978.914139240IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 414 aa     Download sequence    Send to blast
MGRVKLEIKK IENPTNRQVT YSKRRNGLMK KAYELSVLCD IDLALVMFSP SGKLTQYCNC  60
SIEEVIGRFA NLSMHERNKS FEDMMTRFSN NQMHHDRSKY NKKVENLEHL HKALKKLAVE  120
QDLVASHQLL SVSKTTYELE ILQQELKKSQ LEKELVQQQA RLYLADEQLL RRVSSVQQLA  180
NMETELEQAL ERVRARKNYV SSAYQTASVM QRRQHEFLGN SLQMMALRQQ QAQQHQAGMA  240
PTQPSFLHWT MQTERSAPTP QDFMEQQTNP PTSLVPASLS RELGSEGEAN LIPGYFSASQ  300
QHSNLEGLRQ VGMGVSRGLT MHDMSLEQPN AAHYIEEEKK GKVEASMGFV TSASAAAVGT  360
EGDSETNLTR VQSEQAHGIT NASDWPPRPA NHHPNALGNG NLFFSQNGHH AWK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3mu6_A2e-17269168Myocyte-specific enhancer factor 2A
3mu6_B2e-17269168Myocyte-specific enhancer factor 2A
3mu6_C2e-17269168Myocyte-specific enhancer factor 2A
3mu6_D2e-17269168Myocyte-specific enhancer factor 2A
6byy_A2e-17185185MEF2 CHIMERA
6byy_B2e-17185185MEF2 CHIMERA
6byy_C2e-17185185MEF2 CHIMERA
6byy_D2e-17185185MEF2 CHIMERA
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ppa.166460.0protonema
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024383339.10.0MADS-box transcription factor 3-like isoform X1
RefseqXP_024383340.10.0MADS-box transcription factor 3-like isoform X1
TrEMBLA0A2K1K6F00.0A0A2K1K6F0_PHYPA; Uncharacterized protein
STRINGPP1S8_101V6.10.0(Physcomitrella patens)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP1617761
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G77980.15e-33AGAMOUS-like 66
Publications ? help Back to Top
  1. Rensing SA, et al.
    The Physcomitrella genome reveals evolutionary insights into the conquest of land by plants.
    Science, 2008. 319(5859): p. 64-9
    [PMID:18079367]