PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c8_6890V3.1.p
Common Namem6, PHYPADRAFT_202183, PPM6
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family M-type_MADS
Protein Properties Length: 411aa    MW: 46291.7 Da    PI: 7.5463
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c8_6890V3.1.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF87.66.7e-28959151
                      S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
            SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                      k+ien +nrqvt+skRrng++KKA+ELSvLCd+++a+i+fs++gkl  ys+
  Pp3c8_6890V3.1.p  9 KKIENPTNRQVTYSKRRNGLIKKAYELSVLCDIDIALIMFSPSGKLTQYSN 59
                      68***********************************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006629.45161IPR002100Transcription factor, MADS-box
SMARTSM004321.0E-37160IPR002100Transcription factor, MADS-box
SuperFamilySSF554553.66E-31287IPR002100Transcription factor, MADS-box
CDDcd002657.17E-37271No hitNo description
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PRINTSPR004043.1E-26323IPR002100Transcription factor, MADS-box
PfamPF003191.3E-251057IPR002100Transcription factor, MADS-box
PRINTSPR004043.1E-262338IPR002100Transcription factor, MADS-box
PRINTSPR004043.1E-263859IPR002100Transcription factor, MADS-box
PROSITE profilePS512978.898138243IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010152Biological Processpollen maturation
GO:0080092Biological Processregulation of pollen tube growth
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 411 aa     Download sequence    Send to blast
MGRVKLEIKK IENPTNRQVT YSKRRNGLIK KAYELSVLCD IDIALIMFSP SGKLTQYSNC  60
SIEDVIGRFA NLPMHERNKS FEDMLTRFAN FHMIHDRNKY NRKIENLEYL HKALKKLAGE  120
KDLVSNQLLL NGSKSYEVGL LQEELKKSQQ EKELVQQRAR LYLADEQLLQ SITSVHELAN  180
METELEQALE RVRARKNYVS SAYEAASVMQ RQQHEFLGNS YQQMIAMRQQ QQQQQQHHQQ  240
QQAGMTGTQS SFLQWPVQER GEATLQDFME QQTNPAAALM PTPLASREVP SSGEANSTGF  300
FGSASQSSLQ SLGHINILGG NRGLSIHDMA MDQSSAQYDD HKKAKLEASM GFASSPGRAA  360
AEAAADTFTN QSEHGSATNS NWHQAHHHAQ AYTNSQYPTG YFTQSADAWK *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3mu6_A6e-17269168Myocyte-specific enhancer factor 2A
3mu6_B6e-17269168Myocyte-specific enhancer factor 2A
3mu6_C6e-17269168Myocyte-specific enhancer factor 2A
3mu6_D6e-17269168Myocyte-specific enhancer factor 2A
6byy_A6e-17185185MEF2 CHIMERA
6byy_B6e-17185185MEF2 CHIMERA
6byy_C6e-17185185MEF2 CHIMERA
6byy_D6e-17185185MEF2 CHIMERA
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ppa.90460.0gametophore| protonema
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ8713690.0AJ871369.1 Physcomitrella patens mRNA for putative MADS-domain transcription factor (m6 gene).
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024381935.10.0MADS-box transcription factor 3-like isoform X2
TrEMBLA9RGL10.0A9RGL1_PHYPA; MIKC MADS-domain protein PPM6
STRINGPP1S8_95V6.10.0(Physcomitrella patens)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP1617761
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22130.15e-36AGAMOUS-like 104
Publications ? help Back to Top
  1. Rensing SA, et al.
    The Physcomitrella genome reveals evolutionary insights into the conquest of land by plants.
    Science, 2008. 319(5859): p. 64-9
    [PMID:18079367]