PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c8_6080V3.1.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family NAC
Protein Properties Length: 680aa    MW: 74673 Da    PI: 4.4564
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c8_6080V3.1.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM1683.2e-5251311128
               NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 
                       lppG+rFhPtdeelv +yLk k++gk++e+ + i+ vd+yk+ePwdLp k  v ++++ewyf+s rdkky++g r+nrat++gyWk+tgkd+ 
  Pp3c8_6080V3.1.p   5 LPPGYRFHPTDEELVAYYLKYKINGKQIEM-NPIAVVDLYKCEPWDLPvKsGVGGNDQEWYFYSARDKKYPNGARTNRATQRGYWKSTGKDRV 96 
                       79****************************.88***************5346666888**********************************9 PP

               NAM  92 vlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                       v++     +g+kktLv+y+grap+ge+tdWvmheyr+
  Pp3c8_6080V3.1.p  97 VKC--AISTGMKKTLVYYTGRAPRGERTDWVMHEYRM 131
                       998..7889**************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019415.62E-553154IPR003441NAC domain
PROSITE profilePS5100555.035154IPR003441NAC domain
PfamPF023652.3E-276131IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009644Biological Processresponse to high light intensity
GO:0009962Biological Processregulation of flavonoid biosynthetic process
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 680 aa     Download sequence    Send to blast
MAQRLPPGYR FHPTDEELVA YYLKYKINGK QIEMNPIAVV DLYKCEPWDL PVKSGVGGND  60
QEWYFYSARD KKYPNGARTN RATQRGYWKS TGKDRVVKCA ISTGMKKTLV YYTGRAPRGE  120
RTDWVMHEYR MEDRVYENLR GPQEPYVLAR VFKKSGSGPK NGEQYGAPFI EEPSSPLSGN  180
GGETSEPYEQ PAVEYPLPLL KVEPGLSPQL ENYGNECESP YFNNMCMQEL EDLMFSESFD  240
TDVPRLANGD LDGVSIGSPT SVQDGFRWED LLPEQPQATT EDDTWKDLVI NNVDELLSGN  300
DRFIADGSLG MGTTQHVVHD TDDLLSGPGD YSGDGDFLEI KDLINLEDDI DVSGSNISVG  360
EYEGFDFSAS AIQLRPPRIV QWPMQFDPQG ETSRRMLLAC RPGSQPEQFS STLSAPRILH  420
TSASSRNLSD FADRAISSTG LHTSAEEGWS NDGDLVTLAR EGSGYVPDAD FGSNVEGTQS  480
SSSFVDPEDA GIVAPSWGAG GDPVSDYPAT STEFSSNYWE TCGSDPVPQA ADIKQKASGK  540
LTSGLSSLLT PILPASAAEL PSFSNTYVTA SDTHVTALTI TCSCSENGAK TVQAVMMNYA  600
GGKLHQETMS GTWKPCTEDC KLQNCVHCSQ RRASQRQLAK GSRSGFVYVF LLGVVSAIIW  660
FLLLRGSWRI AQHLYNLIL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A3e-44513115140Stress-induced transcription factor NAC1
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ppa.112350.0protonema
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00059PBMTransfer from AT5G04410Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024382443.10.0NAC domain-containing protein 45-like
TrEMBLA0A2K1K6B00.0A0A2K1K6B0_PHYPA; Uncharacterized protein
STRINGPP1S8_36V6.10.0(Physcomitrella patens)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP1715800
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04410.11e-70NAC domain containing protein 2