PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c8_5110V3.2.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family WRKY
Protein Properties Length: 868aa    MW: 92672.6 Da    PI: 8.0368
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c8_5110V3.2.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY98.54.1e-31453511159
                       ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
              WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                       ldDg++WrKYGqK vk+s++pr+YYrCt++ Cpv+k+vers+ed  +v++tYeg+H h+
  Pp3c8_5110V3.2.p 453 LDDGFKWRKYGQKAVKNSPHPRNYYRCTTPLCPVRKRVERSNEDAGLVITTYEGTHSHQ 511
                       59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.805.8E-33438513IPR003657WRKY domain
SuperFamilySSF1182909.81E-28446513IPR003657WRKY domain
PROSITE profilePS5081130.997448513IPR003657WRKY domain
SMARTSM007746.4E-38453512IPR003657WRKY domain
PfamPF031062.0E-24454511IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 868 aa     Download sequence    Send to blast
MADKAPNEEE AGHSEAFFDQ FLRRLDQTDH ETTVSPSTSR SSMAAPSEYS SLATSNPWPM  60
FTVSSPVNPD LQSALQGIYR SSVPSTYLST NPLAEFPWLL EDQLIESHHR GDSKLASNLE  120
SNDSGLRYST HYSLPATHGE QLSATQGSFL GSAGVENIDP SLSSQSLRWI AIKEEPASSH  180
TSAGSPVRPG SVARKEIQGH GTSTGSYGSS PKLDAGPVPR FDRTISSEER SIPSPSLTQF  240
GGSSQSPLSR SQNYWSAPAS PRLSEAVPGA SASISTSAGT SNTSLPSEST SNAGEEDEAE  300
KKEISTAGSE DARGGKRKKP WASTAGGEGG AARETESKKS EPKSRLLCII LPSIGTQTCG  360
SLSMSGSVHL GTSTLIQSVD YRQCEVLSQA KGPMIEWSPS PAGCIGMQNL NRSTSLLPAD  420
VLIRKNKPRK RGGAKRLREP RYAIKTRTDV DVLDDGFKWR KYGQKAVKNS PHPRNYYRCT  480
TPLCPVRKRV ERSNEDAGLV ITTYEGTHSH QTPGFHRPAE GYFSDRATVG GGLFPNPGQS  540
PLGPGSNLLP LPPGFDLASL QQATALRSIP GLQPNQNIPG SNQQQQQQMN GLSRGPFSYP  600
GQENMFRTSP FLGLQDPAFG IVKHEPFHFT PQAPDFMSGN MASLPHLNVR QQFEQPGSSL  660
ARPGAGPSQP LDFSTPNHTS VHRSSSGPIP QISSPLFTGL NFPIFPSSSN TGPASSSSTP  720
RESDPSNLMM CRGQTRHDAG VGGSGSRIGQ SLETRINRCH PGQPNFYHVP SSETPLPGRL  780
ISGSHGLGSP LDPLTRTGQQ RSIMSTMQSH VQQTRSSSGV SSSGEQSPES LTLPDAAGGE  840
GLLQDMVRHG GPKKHEESIY FICALVS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A6e-26441513274WRKY transcription factor 1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024382005.10.0probable WRKY transcription factor 10
TrEMBLA0A2K1K6840.0A0A2K1K684_PHYPA; Uncharacterized protein
STRINGPP1S35_401V6.10.0(Physcomitrella patens)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP1417875
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69310.23e-35WRKY DNA-binding protein 57