PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Pp3c8_440V3.5.p | ||||||||
Common Name | PHYPADRAFT_150953 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
|
||||||||
Family | HD-ZIP | ||||||||
Protein Properties | Length: 327aa MW: 36661.3 Da PI: 4.6829 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 56.5 | 4.5e-18 | 92 | 145 | 3 | 56 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k++++t +q++ Le+ Fe ++++ +++ +LAk+lg+ rqV vWFqNrRa++k Pp3c8_440V3.5.p 92 KKRRLTLDQVRSLERNFEVENKLEPDRKMQLAKELGMRPRQVAVWFQNRRARWK 145 456899***********************************************9 PP | |||||||
2 | HD-ZIP_I/II | 117.5 | 7.3e-38 | 91 | 183 | 1 | 93 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 ekkrrl+ +qv++LE++Fe e+kLep+rK++la+eLg++prqvavWFqnrRAR+ktkqlE+dye+L + +++lk++ e + +e++ L++el++ Pp3c8_440V3.5.p 91 EKKRRLTLDQVRSLERNFEVENKLEPDRKMQLAKELGMRPRQVAVWFQNRRARWKTKQLERDYETLEAGFKRLKADYELVLDEKNYLKAELQR 183 69***************************************************************************************9986 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 5.99E-19 | 82 | 149 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 16.925 | 87 | 147 | IPR001356 | Homeobox domain |
SMART | SM00389 | 3.2E-15 | 90 | 151 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 2.2E-15 | 92 | 145 | IPR001356 | Homeobox domain |
CDD | cd00086 | 9.96E-16 | 92 | 148 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 5.8E-19 | 94 | 154 | IPR009057 | Homeodomain-like |
PRINTS | PR00031 | 1.4E-5 | 118 | 127 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 122 | 145 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 1.4E-5 | 127 | 143 | IPR000047 | Helix-turn-helix motif |
Pfam | PF02183 | 2.1E-12 | 147 | 186 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Plant Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PO Term | PO Category | PO Description | ||||
PO:0030018 | anatomy | gametophore |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 327 aa Download sequence Send to blast |
MAISSTGYYS GQNEMFMRDE STSNSLAAML SPCLPQVDLQ ARRYGGGNLE DDGRVQGVGQ 60 KRPSFATNDS TTVEDGAEDG DEGTASASHL EKKRRLTLDQ VRSLERNFEV ENKLEPDRKM 120 QLAKELGMRP RQVAVWFQNR RARWKTKQLE RDYETLEAGF KRLKADYELV LDEKNYLKAE 180 LQRLSGDTLG YKQGDDNQGA ESSKIPERDL DVSISVARQH NARASPTVDT SLAKEETRGS 240 TDGSSSDIVD ADSPRSTDSS RISAIQSHDF PPESFMVHPE LLQIYSEETL HPDSAVKLED 300 GFHEDQSCNY LLLHLDHQSG VLPWWD* |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 139 | 147 | RRARWKTKQ |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_024382287.1 | 0.0 | homeobox-leucine zipper protein HOX20-like | ||||
Refseq | XP_024382288.1 | 0.0 | homeobox-leucine zipper protein HOX20-like | ||||
Refseq | XP_024382290.1 | 0.0 | homeobox-leucine zipper protein HOX20-like | ||||
TrEMBL | A0A2K1K5M0 | 0.0 | A0A2K1K5M0_PHYPA; Uncharacterized protein | ||||
STRING | PP1S325_51V6.1 | 0.0 | (Physcomitrella patens) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G69780.1 | 6e-39 | HD-ZIP family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Pp3c8_440V3.5.p |
Entrez Gene | 5945460 |
Publications ? help Back to Top | |||
---|---|---|---|
|